g84229.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML018509.1:146966-147367[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-11 6.7e-09 38.0 0.0 1 42 18 58 18 60 0.95
Sequence Information
- Coding Sequence
- ATGGTTCGAACCCAAAAAAGAATTTTGGGATCTAGAAAATACCGAAATTTCTCGGAGGAGCAACTTCATAAAGCAGTGGAAGCTGTTAGGTCCGGGATTTCTTTGAGGAAAGCCGAAGAAAAATTTGGAATACCACGATGTTCTATAAATAGAGCAATAAATGGAAAGAACACAGGAAAGGTCGGTAGACCATTTGTTTTAAATGAAGTTGACCAAAATGCTTTAGTAATGTGTCTATGTTCAGCTGGGGATTGGGGCTTTCCTCTCACACTATACGATATTAAACTCATTGTCAAAGCATTCCTCGACCGTTCTGGAAGAAATGGAAATGGAAGAAAAACAACATGCCAGGAGAGATTTTGTCATGTCTTTCTTGAAGCGTCACCAGAACACTTTGAGTAA
- Protein Sequence
- MVRTQKRILGSRKYRNFSEEQLHKAVEAVRSGISLRKAEEKFGIPRCSINRAINGKNTGKVGRPFVLNEVDQNALVMCLCSAGDWGFPLTLYDIKLIVKAFLDRSGRNGNGRKTTCQERFCHVFLEASPEHFE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436785; iTF_00436462; iTF_00436472;
- 90% Identity
- iTF_00436785;
- 80% Identity
- -