g11894.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015079.1:1093139-1094103[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-11 9.3e-09 37.6 0.3 2 45 4 46 3 46 0.95 2 2 5.2 1.2e+03 2.0 0.0 17 29 179 191 178 192 0.91
Sequence Information
- Coding Sequence
- ATGCGGTCTGAGGCGAATCTCGTTGCAGCGTTAGAAGCAATAAGAGCTGGAAGCAGTATAAGCCAAGCTTCATTACGATATGAAATACCTCGAACAACACTTGTACTACATTATCGCAGCCAAAATTCGGTTAAACGACTTGGAAGGAAAAGTGTTTTAAGTTTTAAACAAGAAAGAGATCTAGTTCGCAGAATTCATAAACTAGCTGAGGTGGGCATGCCAATAACCAGAACCGTATTGGCCAAGAAAGGTGCTAAACGTATCAACTTGACAGCGCCTGAACACGGTGAAAATGTTAGTATTGTTGGTTGTGGAAATGCCCTGGGGCAAGCCATCCCACCGTTCATTCTTTTCAAAGGGAAAATATTGAAGCCTGAATGGAATGATCATCTACCACCAGGATCAACTGTAATGATGACACAGAAAGGGAGCATGACAAATGAGGCGTTTATTTCATGGCTAGCACATTTTGCAAAGTATAAAAATACAGAACCCACACTCCTGATATTCAATGGTGCAAAATCGCATCTGGACATAAGTATTGTTGAAGCTGCAGAAAATTATGGTGTTAGTTTATTTTGTCTTCCAACGATAGAAAAACCACCCAAAGGTAAAAGTAACAAAGAACCTTCCAAACAACAAGGAAAATCAAAAGACAAAAACAAAGAACaggaagaaaagaaaataaacaaacatCAAAAAGAACAAGACAATCTgaacaaacaaaataaagaaaagaaaataaacaagaattTAAAAAGTAGTGAATCATGGTTCTGTCATGTATGTAATGAAGACCGCCAGGCTGATATGAGATTATGTCTTGCATGTGGCCAATACATGCATGAAGAGTGTGTGGGTCTTACTAAACATGATAAGGATAAATTCATATGCCCCAATTGTTCTCAAGAATAG
- Protein Sequence
- MRSEANLVAALEAIRAGSSISQASLRYEIPRTTLVLHYRSQNSVKRLGRKSVLSFKQERDLVRRIHKLAEVGMPITRTVLAKKGAKRINLTAPEHGENVSIVGCGNALGQAIPPFILFKGKILKPEWNDHLPPGSTVMMTQKGSMTNEAFISWLAHFAKYKNTEPTLLIFNGAKSHLDISIVEAAENYGVSLFCLPTIEKPPKGKSNKEPSKQQGKSKDKNKEQEEKKINKHQKEQDNLNKQNKEKKINKNLKSSESWFCHVCNEDRQADMRLCLACGQYMHEECVGLTKHDKDKFICPNCSQE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -