g11895.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015079.1:1094498-1095448[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-11 9.8e-09 37.5 0.3 2 45 4 46 3 46 0.95 2 2 4.3 1e+03 2.3 0.0 17 29 281 293 280 315 0.91
Sequence Information
- Coding Sequence
- ATGCGGTCTGAGGCGAATCTCGTTGCAGCGTTAGAAGCAATAAGAGCTGGAAGCAGTATAAGCCAAGCTTCATTACGATATGAAATACCTCGAACAACACTTGTACTACATTATCGCAGCCAAAATTCGGTTAAACGACTTGGAAGGAAAAGTGTTTTAAGTTTTAAACAAGAAAGAGATCTAGTTCGCAGAATTCATAAACTAGCTGAGGTGGGCATGCCAATAACCAGTAAAATAGTAAGAAGAAGTGTATTTTCGTATGCGATGATAATGAACATTCCTAATCCTTTTTCTGATACATCTAAATTAGCAGGAAGGAAATTGCTGAAATTATTCTTTGCAAGACATCCCGATGTGGCTAGAAGGAAGACTCAGCAAATGAATCCAGCAAGAGCACAGAAAATGAATCCATTTATTGTAAAGGATTATTTTAAGAAATTGGAGGAAGTATTCATTAAATTGGAATTGTTTGATAAACCTGGAAACGTATACAATATAGACGAGAAAGGTTGCCGTCTAACGATCCATAAACAGCAAACCGTATTGGCCAAGAAAGGTGCTAAACGTATCAACTTGACAGCGCCTGAACACGGTGAAAATGTTAGTATTGTTGGTTGTGGAAATGCCCTGGGGCAAGCCATCCCACCGTTCATTCTTTTCAAAGGGAAAATATTGAAGCCTGAATGGAATGATCATCTACCACCAGGATCAACTGTAATGATGACACAGAAAGGGAGCATGACAAATGAGGCGTTTATTTCATGGCTAGCACATTTTGCAAAGTATAAAAATACAGAACCCACACTCCTGATATTCAATGGTGCAAAATCGCATCTGGACATAAGTATTGTTGAAGCTGCAGAAAATTATGGTGTTAGTTTATTTTGTCTTCCAAGTAACACAATAGCAAAGCTCAAGGAATTACGAAGGATTTATTTTTCACAGCGATAG
- Protein Sequence
- MRSEANLVAALEAIRAGSSISQASLRYEIPRTTLVLHYRSQNSVKRLGRKSVLSFKQERDLVRRIHKLAEVGMPITSKIVRRSVFSYAMIMNIPNPFSDTSKLAGRKLLKLFFARHPDVARRKTQQMNPARAQKMNPFIVKDYFKKLEEVFIKLELFDKPGNVYNIDEKGCRLTIHKQQTVLAKKGAKRINLTAPEHGENVSIVGCGNALGQAIPPFILFKGKILKPEWNDHLPPGSTVMMTQKGSMTNEAFISWLAHFAKYKNTEPTLLIFNGAKSHLDISIVEAAENYGVSLFCLPSNTIAKLKELRRIYFSQR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327799;
- 90% Identity
- -
- 80% Identity
- -