g82927.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML018351.1:17998-19016[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-07 0.00012 24.5 0.0 4 35 18 49 15 51 0.89 2 2 7.6e-06 0.0018 20.7 0.0 7 35 84 112 83 114 0.93
Sequence Information
- Coding Sequence
- ATGCCTAAAGTCAAAGAAGGGTGCACCTATAAACGAAAATACACTGAAAACGATGTAATTAAGGCCCTAGATGCAATTGATAATGGCCTGTCAACTAAAGCTGCTGCGGAGAAATTTGGAGTTCCCAGAGCGACAATCCAGTTTCGTCAAAGTGCAAAATTTAGAAACAAAACAACTTTTGGCCCTAATCCTATCTTAACCATGGAAGAAGAAAAACTTTTGGAAATAAGTAGCCACAGAAATCAAAGAAGGGCCCTAGGTGCAATTGATAATGGCCTTTCAACTAAAGCTGCTGCGGAGAAATTTGGAGTTCCCAGAGCGACAATCCAGTTTCGTCAAAGTGCAAAATTTAGAAACAAAACAACTTTTGGCCCTAATCCTATCTTAACCATGGAAGAAGAAAAACTTTTGGAGAACTGGATAATGAGTAGCCACAGAAAAGGATTTCCAAGGAGGATTGAAGATGTAAAAGCGTCCGTTAAATATTTTCTAGACGCTTCTGAGAGGAAAAATCCATTTCCGAACAATTATCCAGGTGAAGGGTGGTATCGCGCATTTCTAAAGAGGCACCCTAACATAACCACTAGGACATCCGAGGCCGTGTCTTCTGCAAGTTCAAAAGTTGCAGAATCTGACATACGAAAGTGGTTTCAGGACATAGAAAATTATTTAAGGGAAAAAGATTTATTAGAGGTATTGGCAGATCCCCAAAGAGTTTTCAACGGCGATGAGACTAATTTTATGCTGTGTcccaaaaacaaaaaagttttagcgCCTCGGGAGGCACGAAATGTGTACGAGGTTGATTCTGCTCAAGCCAAAACTAACTTAACAGTTATGTTTACATTTCATTGTTCTTGA
- Protein Sequence
- MPKVKEGCTYKRKYTENDVIKALDAIDNGLSTKAAAEKFGVPRATIQFRQSAKFRNKTTFGPNPILTMEEEKLLEISSHRNQRRALGAIDNGLSTKAAAEKFGVPRATIQFRQSAKFRNKTTFGPNPILTMEEEKLLENWIMSSHRKGFPRRIEDVKASVKYFLDASERKNPFPNNYPGEGWYRAFLKRHPNITTRTSEAVSSASSKVAESDIRKWFQDIENYLREKDLLEVLADPQRVFNGDETNFMLCPKNKKVLAPREARNVYEVDSAQAKTNLTVMFTFHCS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -