g39346.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015600.1:469045-470508[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-15 1.2e-12 50.0 0.0 2 39 16 53 15 58 0.88
Sequence Information
- Coding Sequence
- ATGCCGCGGAATTATAAAAGAGTCACCGAAAAAGCTTCGTGGAGAGAGGAGGAGTTGCAAGGAGCACTCCGTGCTATACAGAATGGTATGTCGTTAAGAAAAGCtgcaataaaattttcaattccAAAATCTACGTTACACGAACGACTTAAAAATGGCACTGCCCCTTCTGGACCTTCCTTGGGCCGAAAGCCAGTTTTTTCAGTTGAAGCCGAAAATGCACTTGCTGTTCAAATTAAGAAGCTGGCAAAAGTTTTTTATGGAATAACTCCCCAGGAAGTACGAAGATGTGCTTTTGGATTTGCACAATCAAACAACATCCGAGTCCCCTTTAATCAAGAAAGAAAAATGGCTGGTAAAGACTGGGAAAGGGGCTTCATATCTCGTCACAATATTACGTTAAGGAAACCAGAAGCAACCAGCATTAACAGAATCACAGCTTTTAGTCGCAATGAAGttaccattttttttaacaatttatcCAGACTTatggaaaaatatgcattttcaaccaataaaatttataattgcgATGAAACTGGGGTCACTACTGTACAACGCCCACCAAAAATATATGCAGAAAAAGGTCAGAAGCGTGTTGGATTTGTTACAAGCTGGGAAAGGGGGAAAACAACCACAGCGATGTGTGCCGTCAACGCTACAGGAACCTATATACCTCCCATGTTTATATTTGCACGCCAAAGAATGGCGTCCCATCTTCAACGAAACGGTCCCCCAGGTGCCCTTTACACATGCTCAAAAAATGGGTGGATTACAGAGGACATATTTCTTACTTGGTTACAACATTTTCAAGCATTTGTAAAAGCATCCAAAGAAGATCCAGTTCTTTTAATCATGGACAATCATAGCACTCACTGCACGTTACAAGCATATAATTTTTGTAGAGATAACGGTATTGCTGTTCTGACAATCCCTCCACATTCATCACATCGCCTTCAGCCACTCGATGTGAGCTTTTACTTTCCTCTAAAGACCGCATTCAACTCTGAATGTTCCAAATATTTGACCAGCCATCCAGGGGAGAAAATCACGCCTAGTGAGATTGCTGAATTATTTAATTTAGCATTTAGTAGAGTGGCAACCCCGGAAAAGGCTATCAAGGGATTTAAAGAGACAGGTATTTTCCCCTACAACCCTGACGTATTCACAGATGAAGATTTTGCTCCTGCAGAAACCCTTCAATCCACTGTTTCTGATGCACTTCAAGAACCTACCCAAGCAGAAAAACTACTCAAAACAAATGAGACTACCCCTGAAAAAAATAGTAGTGTGAATGAGACAGAATTAAAAAATGTTTCCTTTGCCGAGATAATTCCTCTACCATCTTGTTCTCACGAAAATGTTGTAAAGAGACAAAATAAGGCAAACAAGCAACACTCTATTGTATTTACGTCAACACCGCTAAAAGAAGAgctagaaaaaaaaagaagagaagaaaaataa
- Protein Sequence
- MPRNYKRVTEKASWREEELQGALRAIQNGMSLRKAAIKFSIPKSTLHERLKNGTAPSGPSLGRKPVFSVEAENALAVQIKKLAKVFYGITPQEVRRCAFGFAQSNNIRVPFNQERKMAGKDWERGFISRHNITLRKPEATSINRITAFSRNEVTIFFNNLSRLMEKYAFSTNKIYNCDETGVTTVQRPPKIYAEKGQKRVGFVTSWERGKTTTAMCAVNATGTYIPPMFIFARQRMASHLQRNGPPGALYTCSKNGWITEDIFLTWLQHFQAFVKASKEDPVLLIMDNHSTHCTLQAYNFCRDNGIAVLTIPPHSSHRLQPLDVSFYFPLKTAFNSECSKYLTSHPGEKITPSEIAELFNLAFSRVATPEKAIKGFKETGIFPYNPDVFTDEDFAPAETLQSTVSDALQEPTQAEKLLKTNETTPEKNSSVNETELKNVSFAEIIPLPSCSHENVVKRQNKANKQHSIVFTSTPLKEELEKKRREEK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436402;
- 90% Identity
- iTF_00436402;
- 80% Identity
- iTF_00436398;