g40044.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015622.1:336014-336752[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9e-05 0.009 18.4 0.0 3 44 18 59 16 59 0.95 2 3 3.9e-05 0.009 18.4 0.0 3 44 79 120 77 120 0.95 3 3 0.005 1.2 11.6 0.0 3 44 140 181 138 181 0.94
Sequence Information
- Coding Sequence
- ATGGTCAGAAATTACGCCCGAAAGACGGAGAGAGGTTTGCTCTATTCAGCAGAAGCCCTTAACAGTGCCTTAAGGGATATAAGAAATCAGAATTTCACTGTCAAGGGAGCATCGTCCTTATACAGTGTCCCAGTGACAAAATTATGGGATCACTTAAGTGGAAGAACAGGTGCGAAGGTAGAGATGGTCAGAAATTACGCCCGAAAGACGGAGAGAGGTTTGCTCTATTCAGCAGAAGCCCTTAACAGTGCCTTAAGGGATATAAGAAATCAGAATTTCACTGTCAAGGGAGCATCGTCCTTATACAGTGTCCCAGTGACAAAATTATGGGATCACTTAAGTGGAAGAACAGGTGCGAAGGTAGAGATGGTCAGAAATTACGCCCGAAAGACGGAGAGAGGTTTGCTCTATTCAGCAGAAGCCCTTAACAGTGCCTTAACGGATATAAGAAATCAGAATTTCACTGTCAAGGGAGCATCGTCCTTATACAGTGCCCCAGTGACAAAATTATGGGATCACTTAAGTGGAAGAACAGGTGCGAAGGTATCAGAACAAGGTCGATATACTGATATTCCATTCGCAGAAGAAAAGCAATCTTATCTTAATTTATATACAACATAA
- Protein Sequence
- MVRNYARKTERGLLYSAEALNSALRDIRNQNFTVKGASSLYSVPVTKLWDHLSGRTGAKVEMVRNYARKTERGLLYSAEALNSALRDIRNQNFTVKGASSLYSVPVTKLWDHLSGRTGAKVEMVRNYARKTERGLLYSAEALNSALTDIRNQNFTVKGASSLYSAPVTKLWDHLSGRTGAKVSEQGRYTDIPFAEEKQSYLNLYTT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -