g25293.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015276.1:545859-547009[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-09 9.1e-07 31.2 0.3 2 42 11 50 10 53 0.88 2 2 3.9e-09 9.1e-07 31.2 0.3 2 42 71 110 70 113 0.88
Sequence Information
- Coding Sequence
- atgccgaatagaaaGAGAGCCATGTGGTCTGAGTCGAATCTCGTTGCAGCGTTAGAAGCAATAAGAGCTGGAAGCAGTATAAGCCAAGCTTCATTACGATATGAAATATCTCGAACAACACTTGGACTACATTATCGCAGCCAAAATTTGGTTAAACGAAATGGTGCACGCCTTTATAAaatgccgaatagaaaGAGAGCCATGTGGTCTGAGTCGAATCTCGTTGCAGCGTTAGAAGCAATAAGAGCTGGAAGCAGTATAAGCCAAGCTTCATTACGATATGAAATATCTCGAACAACACTTGGACTACATTATCGCAGCCAAAATTTGGTTAAACGAAATGGAAGGAAAAGTGTTTTAAGTTTTGAACAAGAAAGAGATCTAGTTCGCAGAATTCATAAACTAGCATAG
- Protein Sequence
- MPNRKRAMWSESNLVAALEAIRAGSSISQASLRYEISRTTLGLHYRSQNLVKRNGARLYKMPNRKRAMWSESNLVAALEAIRAGSSISQASLRYEISRTTLGLHYRSQNLVKRNGRKSVLSFEQERDLVRRIHKLA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -