g12948.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- Arid5a
- Assembly
- GCA_003013835.2
- Location
- ML015091.1:506742-531472[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-25 3e-21 78.3 0.0 2 89 113 198 112 198 0.94 2 2 3.5 4.9e+04 -2.5 0.0 36 82 614 664 606 665 0.66
Sequence Information
- Coding Sequence
- ATGGCTGCGACAATTAGTTCTCCCGCCAATTGTGAATTACGCGCTGTCATTCGCTTTTTGCAGGCAGAAGGCAATAGTGCAGCTGCAATTCATCGAAGGATGTGTCAAGTGTACGGAGAAGGGTTTATGAGTGATGGAGTTGTGCGTGAATGGtgccgaaaattcaaagaagGACGAAATGATGTGCATGACGAAGGGAGTCAAGGACGCAATTCTGTCGTTACAGATGAGCTTGTTCAACGTGTTGATGAAGCGGTTGAAAGTAAAAATATCGTTCCACCCGAGAGTACTGCGAATCCTATTCGAAGAAGTACGCGTTGTCATGAAAATAACGAAAACAGAGAGTTTGTCAGAAAGCTGGGAGCCTTCATGAAGTCAAATCGCACACCAATAGGGAGAATACCATCTTTAGGTTACAAAGAATtaaatttgcATGAATTCTTCACAAGAGTACAAAAACTTGGAGGCTACGATTGCGTCACAACAAATCGTCTCTGGAAGTCCATATTCGATGAAATGAGCGGCCATCAAAACAGTACCAGCGCAGCTACAGTGATACGACGTCACTACGAAAGGTTCTTATTGCCGTATGAACGCCATATTCACGGTGAAGAATATAAACCATTGCCTGTATCGGAACGAAGAAGATTGAAATACAAGCGAGGTAGCGGCAGTTTGAGCGATGCAGAGTCTAGTAGTGACAGTTCTTCAGTACCTTCAACGTCCAGAAAAGCTTCTGTATCGGAACCGGTGGTTGCCGAAAGCAAGgAACATGTTAAAACAGAAGGAAAGACATCTTCGTTGCGAAGTATTCGAGTGAAATCAGACAGACAAAAAGATAAACAACTTCAAAGTGAAAAAGATAACGCCAATAACAATAACAACAATGAAAAATGGCAGTCACCGATAAAGACGGAACAGACAAATGACAGTAAAGCAAAAGTAGAAAAACTTGTTATTAAAACAGAAAGTATGACAGTAAAAACTGAGCTGTCAACAGTGATAACTCAATCCCATCCAGTAAAAATAGAATATGCTACCGTTAAAAGTGAAACACAAAATGAAAACGCCGAAattaaaattgaaaacaaaaatataccGGTTACAATTTCAGTGAAAATAGAGACTAACTTGCAAGCCGAATCCACTCCTGTTAAATTAGAAGAATGTCCTTCAGTGAAGCTTGAAAATGATCCAGTTTCACAAGAACCAGATAATAGTAACGTAAAAGTTGAGGTAATACCTATTAAGACAGAACCACTTACCTCAGCTGCCACACCAGTAGCTATGAAAGTACCGGTCAACGAGATAATGTCTCCCGTAGAAGGCAAAGAGAATATTCCAATTATAAAATCGACAGAAAACAATGTGGAGATTATAGAAGTCCCATGTAGACCTAGGGTTTCAGAAAGTAGTCGCGTCGAAAATGAAAGTTATAGAAACAactttattcatgaaataaagAAGCGGAAACTAGATATTCTAAAGGAAGGTGGTTTAGAGGTCACGCCGGTTAGACCTGCTGTACAAAAAGATGGAAGGCCTTCTGTTATACAACCACCCCCTGTCCAGCTTATACCCAAATCGATTAAATCTGAAACTATGCCACCTCCGACCAGTGTTCCCTTAAAAAGAACTCATATATCAGTTCCTCCAACATTAAATATAAGCCAGATACCCACTACTCCGACGAAAAAATCTACTGGATCTAGTTTTAGTTTTGTTAACGGTGCATCGCCTCCAAAAGTAGTCCAATCCAGATCCATTTATTCCTATTCTGAGAAAACTGTTTATGGAAATCCTAAAGATATTTTAAGCCCCATGGTCCACGCTCCGAAATTCGTAGATACCGTTTCTAGACACACCGGAGGAGATCCAGTTGATTTGTCGGTGAATAGTCCACAAAAGCCTATAGTTGAAATAATGCGAGTTCCTCAGACTTCATCCAGTTCGCCATACAACAGAGAAAGTGTCACTAAAAACTTGTACAAGACGAGTTCTATTATGGACGGAAGAAGGTTAGGTCCCAACTTAGAAATCACTTTAGTTGGTCCTAATAATAAAACCCATCCGAATAacttacagaaaatgtacaactATCCACCCCATTCTACATCCCAAGCTTCTTTACCACAAAAACGAGTGCCCACTAATTATTACGCTTCTTCAAAACCGACAAAAGGCGATGAAAATGGTAAGTTCAAATCAAACGGTTCTCATCTGCATCATAGGGCAAATATGGACTTGAATTTACTAATGAAACAGGAATCCGCCAAACCCGCGACAAGTAGACAGTCCCAACAGAATTTAAAGCAGTTTTCAAATCCTACAGTGCCAACATTTCCACCGTATTTAACACAACTTTACGAGCAAGCTAGTAAAGGTATATCGCCTTATTTACCGTTCATGGATCCCACGATGTACTACACTGCCGCTATGCAGAATATATATTCGAGTAATAACTTGAACTCTGCACCGATTTTGCCCATGCCCACACCAGAGCAGCTCAAATTGTATGCCGAATTAATGGCCCACGGCCGAATACCGTATCCTTTCCAAATGCCTCACGATAATAACAAATTGAAAAAACAGTAA
- Protein Sequence
- MAATISSPANCELRAVIRFLQAEGNSAAAIHRRMCQVYGEGFMSDGVVREWCRKFKEGRNDVHDEGSQGRNSVVTDELVQRVDEAVESKNIVPPESTANPIRRSTRCHENNENREFVRKLGAFMKSNRTPIGRIPSLGYKELNLHEFFTRVQKLGGYDCVTTNRLWKSIFDEMSGHQNSTSAATVIRRHYERFLLPYERHIHGEEYKPLPVSERRRLKYKRGSGSLSDAESSSDSSSVPSTSRKASVSEPVVAESKEHVKTEGKTSSLRSIRVKSDRQKDKQLQSEKDNANNNNNNEKWQSPIKTEQTNDSKAKVEKLVIKTESMTVKTELSTVITQSHPVKIEYATVKSETQNENAEIKIENKNIPVTISVKIETNLQAESTPVKLEECPSVKLENDPVSQEPDNSNVKVEVIPIKTEPLTSAATPVAMKVPVNEIMSPVEGKENIPIIKSTENNVEIIEVPCRPRVSESSRVENESYRNNFIHEIKKRKLDILKEGGLEVTPVRPAVQKDGRPSVIQPPPVQLIPKSIKSETMPPPTSVPLKRTHISVPPTLNISQIPTTPTKKSTGSSFSFVNGASPPKVVQSRSIYSYSEKTVYGNPKDILSPMVHAPKFVDTVSRHTGGDPVDLSVNSPQKPIVEIMRVPQTSSSSPYNRESVTKNLYKTSSIMDGRRLGPNLEITLVGPNNKTHPNNLQKMYNYPPHSTSQASLPQKRVPTNYYASSKPTKGDENGKFKSNGSHLHHRANMDLNLLMKQESAKPATSRQSQQNLKQFSNPTVPTFPPYLTQLYEQASKGISPYLPFMDPTMYYTAAMQNIYSSNNLNSAPILPMPTPEQLKLYAELMAHGRIPYPFQMPHDNNKLKKQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -