Dcan001132.1
Basic Information
- Insect
- Dexiosoma caninum
- Gene Symbol
- -
- Assembly
- GCA_963924685.1
- Location
- OZ004725.1:26190200-26192859[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.035 2.8 9.3 4.0 1 23 55 78 55 78 0.97 2 11 0.00093 0.075 14.2 0.6 1 23 93 116 93 116 0.92 3 11 0.0056 0.45 11.8 3.1 1 23 124 147 124 147 0.96 4 11 0.016 1.2 10.4 0.3 1 23 160 183 160 183 0.93 5 11 0.0057 0.46 11.8 0.9 2 23 197 219 196 219 0.95 6 11 1e-05 0.00081 20.4 1.1 2 23 337 358 336 358 0.97 7 11 1.1 89 4.6 1.3 1 23 365 390 365 390 0.84 8 11 8.4e-05 0.0067 17.5 0.4 1 23 395 417 395 417 0.96 9 11 9.9e-06 0.0008 20.4 2.4 1 23 423 446 423 446 0.96 10 11 0.005 0.4 11.9 1.1 1 23 451 475 451 475 0.86 11 11 0.0069 0.55 11.5 6.5 1 23 480 503 480 503 0.95
Sequence Information
- Coding Sequence
- atgaagAATCCTTTAGAAGATAATAAAAATGCTGAAGAGttaaaaattgaaatggaaattGTAAGTGAATATATTCTACCAGTTCCAGGTAGTATCTCATATTCAACTTGCGATTTATTGCCTTCAAATGTCCAAAGACCAAACCAACGCACTGGGCCACCatttaaatgtgaattttgtgaACATCGTTTGCCAACGAAAAATAGCTTATATAAACATGTTCAAAGGAaacataaaaatgaaaagaCTCTTAATGGAGATGCCTTACCATCACAATTTAATTGCTCCCAGTGTTCTAAAATTTTTGCGAAAACGTCATCGCTCAACGTTCATgtagaagaaaaacattttataggCAATAAAAAGAGGTTCGTCTGTGAATACTGTGGTCATAATTTACCTACGAAAAATGCTTTATGTCAGCATCGCATTAGAAAACATCCCTTGATCAAAAAGCACCACaacaaagtattaaaatttaaatgtttgcaGTGCTCGGAATCCTTTATTAGTGCGGAAGTTTTAAATTTGCACAAGGAGAACACACATATCAGAAAGCCTGTTATAAAAGAAGGAAAAGCGTTGATCGAATGCGAAGAATGTGGTCATAAATTACCTACGAAAAATGCTTTAAGTCAACACCGTCTAAGAAAACATGGTGcaaaaaataCTGCAATTTCTTCAACAATAAATGCcgataaattacaaaatgttgTAGCCATAAACAATTCAGAGTTTTGTCCAAACGTACAAATATATGAACCCCCTTTAATCGAAGAAACACTAATTGTGGAAGAAATATCACAAGATGCTACAGATAAATGGTTAGATACTTTAAGCGATACTGATACACAGTCCAAAATCATATCATCGTGTATAGATAcggaaaattatgaaatatccTTGACTACTGATAATTTTAGTCAAAATTTGTTACAGCTAACCAATAATGGATTGGAAAATCGTCAGCAAATGGAagatattttaagtaaaaatattaagtgTATCGAatgtaaattttgcaataaaactttcataggtaggaataaattaaattggcaTATGCGTATGCACGATAAAAATCGTAAACGCTACATATGTCCCATAAAAGAATGTGGCCGTATTTATGTGTCCAAACAATCCTGTGATCTGCACTATAAACAAACACATTTGGATGAGGGCTATTTATGTCAgatttgtcaaaaaattttttcagcaaaacAAACACTCGAAATTCATATACGCTATCATACAAAGGACTTTCCTTACCAGTGTAATTTGTGCGAGAAAAAGTTCGCCCAAAAAGGACACTTAACGCAACACACTGAAATTAAACATCAAAACTTAAGATACATATGTACTGAGCCCGCATgcggtaaaatatttaaaaacagtgTTTCGCTTAGAAATCATTGTTATACGCACTCTTCTATGCCATTTAAATGTAGTCACTGTTCTAAGCAGTATCCACAAAAGAATAAgtTGAGGGATCATCTCTTACATAAACATAATATGAAACATTCCTTAGAAGATTTAGAACAAATGCGCCAATTTAATATTATCCGCACCCGTCATGCTTATATTAAAGTTCAAGCTACAGCTAATGGTAAAGATTATGTGGCAGATAAAGCACCTATAATAAAACAACCTGATTCGCATGACACTCATAAATCCTAA
- Protein Sequence
- MKNPLEDNKNAEELKIEMEIVSEYILPVPGSISYSTCDLLPSNVQRPNQRTGPPFKCEFCEHRLPTKNSLYKHVQRKHKNEKTLNGDALPSQFNCSQCSKIFAKTSSLNVHVEEKHFIGNKKRFVCEYCGHNLPTKNALCQHRIRKHPLIKKHHNKVLKFKCLQCSESFISAEVLNLHKENTHIRKPVIKEGKALIECEECGHKLPTKNALSQHRLRKHGAKNTAISSTINADKLQNVVAINNSEFCPNVQIYEPPLIEETLIVEEISQDATDKWLDTLSDTDTQSKIISSCIDTENYEISLTTDNFSQNLLQLTNNGLENRQQMEDILSKNIKCIECKFCNKTFIGRNKLNWHMRMHDKNRKRYICPIKECGRIYVSKQSCDLHYKQTHLDEGYLCQICQKIFSAKQTLEIHIRYHTKDFPYQCNLCEKKFAQKGHLTQHTEIKHQNLRYICTEPACGKIFKNSVSLRNHCYTHSSMPFKCSHCSKQYPQKNKLRDHLLHKHNMKHSLEDLEQMRQFNIIRTRHAYIKVQATANGKDYVADKAPIIKQPDSHDTHKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -