Basic Information

Insect: Dexiosoma caninum
Gene Symbol: Prdm15
Assembly: GCA_963924685.1
Location: OZ004726.1:23264683-23266575[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0025 0.2 12.9 1.0 1 23 293 316 293 316 0.97

2 10 0.23 18 6.7 0.6 6 23 325 342 325 342 0.99

3 10 7.9e-05 0.0064 17.6 4.1 1 23 348 370 348 370 0.99

4 10 7.7e-06 0.00061 20.8 2.1 1 23 377 399 377 399 0.97

5 10 0.0015 0.12 13.6 0.6 1 23 407 430 407 430 0.94

6 10 1.9e-06 0.00016 22.7 0.9 2 23 437 458 436 458 0.96

7 10 0.00029 0.023 15.8 0.6 3 23 468 489 467 489 0.92

8 10 3.8 3.1e+02 2.9 0.5 3 15 499 511 497 520 0.70

9 10 5.9e-05 0.0047 18.0 3.0 1 23 526 548 526 548 0.97

10 10 3.4e-05 0.0027 18.8 0.2 1 23 554 577 554 577 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0025	0.2	12.9	1.0	1	23	293	316	293	316	0.97
2	10	0.23	18	6.7	0.6	6	23	325	342	325	342	0.99
3	10	7.9e-05	0.0064	17.6	4.1	1	23	348	370	348	370	0.99
4	10	7.7e-06	0.00061	20.8	2.1	1	23	377	399	377	399	0.97
5	10	0.0015	0.12	13.6	0.6	1	23	407	430	407	430	0.94
6	10	1.9e-06	0.00016	22.7	0.9	2	23	437	458	436	458	0.96
7	10	0.00029	0.023	15.8	0.6	3	23	468	489	467	489	0.92
8	10	3.8	3.1e+02	2.9	0.5	3	15	499	511	497	520	0.70
9	10	5.9e-05	0.0047	18.0	3.0	1	23	526	548	526	548	0.97
10	10	3.4e-05	0.0027	18.8	0.2	1	23	554	577	554	577	0.97

Sequence Information

Coding Sequence: ATGGAGAAGTGCATAGTttgtttagaaacaaaaaaagacacAGTTTCTAGCATAAGCACAGCATCCAGTGAATGGATCGAAAGCAAAATGAGAAAgataattgaaaaacatttgtgGTGGTGGTACCTCAAGTCGCCGTCTTATAATAATGGACTTGCAAAGTGGATTTGTTGTGAGTGCTGGCAGGAAATATCATCATTCAATCGCTTTTACGTTAAAATTGAAAGAGCTCACaggaatttcaataaaatgttgttGGTCTCTAAACCTGTTACCAAAAGGCAGCAACAAGGAACAATTGTCAACCTAGAGGAAAATAATAGTGATAAATCTACTGCAGCATTAAAATTGCCTGAAGAGCGACAACGTAAAGAAAACGTAGAACTAGCCGAATGTGTGGACAATTTTGAAGAAGAAATAATTAGTATAGTGGAGataaaaaatgaaatgtgtGTGAGTCCAAAAGCATTGAATATATATGAAGAATCTCTTAATGCTAATTTACATATCGAACAAATTGAGGACAATGATAATGCCATTAACGAAACCGATGTGGATGAGTTGCTTATATTTAAACCGGCTcataataaaagcaaccaaaagcTACATGCTGGCCGAAACAACAAAGAAGtgacaaagaaaacaaatataaaaagtgtGAAACTTAAAGATAATTTAGCATGTGAAACAGTTCCCTTTAATGAAGTACAAAGCGACGAAAATGAGTCGCTTATAAATAAATTGAGCATAACAAAGTCTGAGAATAAAAGTAAACGAAAGATGCATGCTGCCCTAAACAAGAAAGAAGAGACAAaggaagcaaataaaaaaagtttgacaattaaagaaaatttagaatGGGAAACAGTTCACAAGTTTGAATGCAGTATTTGTAATATGCCCGTGCCAGACTTTCGGTCCCTTAAGAAGCATTTCAGAAAGAAACACAATACTCGAGGGTATGCCGTCTGTTGTGGCAAGAAATTTTTCGAACGTTGCCTTCTAGTTGACCATCTTAAAGTACATGCTGATCCCAATTTCTTCAAGTGCCACCTATGTACGAAAACGTATACAAAACGAAGTGGCTTAGAATATCATTTGGAAACACATAAAATTAGGGAACGTGGATTTGACTGTGATGAATGTggcaaatcattttttaaattgtacatGTTAAGGCGCCATAAAATGACTCATGTACcggaaagtgaaaaaaaatataactgttcgcaatgtgaaaaaaaatttgcatcaaATTCTTTGAGGCGTCAGCATGTGGACATTGTACACTCCAAAAAGAATGCCAAAACTTGCAATATATGTGGAAAGACATATAGCAATAAGATGTATTTGTTACGGCATATGGAGGAACATGGCGGAACACATAGTACGACGGAGACCTGCATTATATGCGGTGTCAAATACTCAAATAAATATGCACTAAGGCAACATATGAAAATGCGACACCTAGAAGAAAATCTAAAGGAGCAGATCTGTCCTCATTGTTCCAAAGTTTCGCCTAATATGGTTTCTCATCTTACACATATTTACAATGTACATAAAAAGGAGCGCAAACATGTCTGCAATACATGTAACAAGGCTTTCAAGCATACTTGGGATTTAAAAGAACATTTAGCTACCCATACTGGAGAGCCGTTGTACACGTGCCCCAACTGTCCCCGAAAATTTATAAGGATTGCCAATATGAATGCACATAGGAAAATTCTTCACACCACAGAATGGGAACTaagtcgaaaaaaaaaatttaatcaggcTGCTGGCAACACAATATTGGATGACGTTGGGAAGAAAACTGAAGAAGCacagaaaatatcaaaagagCTTCTGGTTTCAACAGAATCTGGTATAAAAGTATATACGGTGCATTTCTGA
Protein Sequence: MEKCIVCLETKKDTVSSISTASSEWIESKMRKIIEKHLWWWYLKSPSYNNGLAKWICCECWQEISSFNRFYVKIERAHRNFNKMLLVSKPVTKRQQQGTIVNLEENNSDKSTAALKLPEERQRKENVELAECVDNFEEEIISIVEIKNEMCVSPKALNIYEESLNANLHIEQIEDNDNAINETDVDELLIFKPAHNKSNQKLHAGRNNKEVTKKTNIKSVKLKDNLACETVPFNEVQSDENESLINKLSITKSENKSKRKMHAALNKKEETKEANKKSLTIKENLEWETVHKFECSICNMPVPDFRSLKKHFRKKHNTRGYAVCCGKKFFERCLLVDHLKVHADPNFFKCHLCTKTYTKRSGLEYHLETHKIRERGFDCDECGKSFFKLYMLRRHKMTHVPESEKKYNCSQCEKKFASNSLRRQHVDIVHSKKNAKTCNICGKTYSNKMYLLRHMEEHGGTHSTTETCIICGVKYSNKYALRQHMKMRHLEENLKEQICPHCSKVSPNMVSHLTHIYNVHKKERKHVCNTCNKAFKHTWDLKEHLATHTGEPLYTCPNCPRKFIRIANMNAHRKILHTTEWELSRKKKFNQAAGNTILDDVGKKTEEAQKISKELLVSTESGIKVYTVHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -