Dcan020003.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dexiosoma caninum
Gene Symbol
-
Assembly
GCA_963924685.1
Location
OZ004728.1:58908597-58911825[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00056 0.045 14.9 0.5 1 23 355 378 355 378 0.96
2 12 0.045 3.6 8.9 3.0 2 23 381 402 380 402 0.95
3 12 6.9e-05 0.0055 17.8 0.9 1 23 409 431 409 431 0.99
4 12 1.1e-06 9.1e-05 23.4 0.9 1 23 437 459 437 459 0.99
5 12 0.0016 0.13 13.5 5.1 1 23 466 488 466 488 0.98
6 12 2.7e-06 0.00022 22.2 1.5 1 23 494 516 494 516 0.96
7 12 5.9e-05 0.0047 18.0 0.1 1 23 522 544 522 544 0.97
8 12 0.0001 0.0081 17.3 0.9 1 23 550 573 550 573 0.97
9 12 0.00069 0.056 14.6 1.8 1 23 579 602 579 602 0.95
10 12 5.2e-05 0.0041 18.2 1.9 1 23 608 630 608 630 0.98
11 12 0.00012 0.0095 17.1 0.5 1 23 636 658 636 658 0.96
12 12 0.0018 0.14 13.3 0.2 1 22 664 685 664 688 0.92

Sequence Information

Coding Sequence
ATGGAGTCAGTACGTTGTTATTTATGTGACCATGAGTTCGTGGAGGGAGAAGAACCGTGGCTAATGTTTGAAGAACGATTGCGTGAAGATGGAAAAGTAGAATGTTCTCTAGCTGATTTGCTGGGTACGATCTTGCAGAAACATTTGGAGGAATCTTTAGCCCATTCAGCGTTGCTTTGCGATTCCTGTAATGCAGATGTTTTAGAATACGAAAATCTAGAAAAACAGTTTTTCCAAATACGGGAGAGAATTTTAAATTCCTACAAGGAAAATTATACTATACTCAATTTAAATAACATCATAAATAGTACTTCTTTTACGAGTAATATCCTGGCAGAACAAATTAATGAGAACAAATTGTTAATCACTAATTCTCAAGATATTGATAATTTTACAAATCAAGAATATGCCGGTATTATTGATATGGAATTAGTTGAAGAAGTTCAGGATGATGAAACAGACTTGGACAATCCCGTAGTATTGAATGAAAGTACacaaaaacatgaaaatgaAGGATTTATTGATAATGTTGATTCAGACATAACGACTGATAATCTGGATTTTGCTGCCTTTAATGAACACGTTGCCCAAAATTCATTACCATCCGGTGTACTGAACTTATCAGATGGCCTTGTGAATTTAGATGTTGCGGAAAAATCTATTGCCGTTCCTAATATACCGTTAGAAGAGCAAGATATCATTATTTACGATGTAAAACCAGATCAGATTCAACACGGTTTAGTTATAAAGCCAGATAACTGCAACGACTTAACTAATTTCGAGAATACCGATGATGATGatctcaattttattattagcagCGACATATTCACAAGTGATGGTAACTGTGAAGAATCCCAGCAATCCGCTATTTCCGACATAATTTCAACTAATAGCGATAACCCAAAGGAAACGGCAATGACTCACGGTCCAAACATATCCCCAAAGCCCGTCTGCAAAAAAGATGGCGAATCATTCGTTTGTCTTGTCTGTGAGACATCTTCCCATTTTGAACGCGATTTATTGATAGAACATTTTCAAACCATGcacaatgcaaaattttatatgtgCGAACAGTGTCATCAGGGCTTTGAAAAACGTCAAGAACTGAAAATCCATATTGAAATTGGGCATAAAGTTCAATGCGAATGTTGTGAACGTACGTTTGCAAATACGCGTCTATATCGTATACATAGACGTACGCATTATGGTAGCGGTAAATCCTATGAGTGTGATGTGTGCCACAAAATGTATATTTCCAAATCGATTTTGGAGGAGCATATGAATACACACACGGGTGTAAGGCCCTACAAGTGCACCGAGTGTCCGAAAAACTTTGCCTCAAAATACACACTGCTTACgcatataaaaattcataaagaaCGACCACGGCCATACCAGTGTGATCAATGCCACAAACGTTTTCTGAATCAACAAAATCTAaatcaacataaaaaattacacGTCTCTGTAAAAGCATTTCAATGTGACATTTGTAACAAGGCATTCACAACACAGCATAGTTTGCAAGTTCATAAAGTGGTCCATTCGGGTCAAAGGCCTTTCATTTGCCGTATATGTGGCAAATCGTTTGCAAGAAGACCAGAAATTCAAGATCATGAACGTATTCACACCGGCGAAAAACCCTTCAAATGTGATTTCTGTCCAATGGCATTTGCACAGCGCACCAATTTGGCCACACACAAGAAGTCAACACactataatgaaaaattacacaaatgcGATATATGTTTGAGATCTTTTAAGCGTAAACGTCTATTGGATTATCACATTCAGGCCATTCATACGGGTGAACGTCCACATAAATGTGATATTTGTGGTTCAGGATTTGTCTATCCGGAACACTACAAGAAACACATGCTAATACACAGTGGCAAAAAGCCATATGCCTGCGAAGTGTGtggaaaacaatttaatagTCGTGACAATCGTAATGCCCACCGTTTTGTGCACAGTGATAAGAAGCCTTACGAATGTATGGAATGTGGTGCTGGCTTCATGCGAAAACCGCTACTTTTAACCCACATGAAACAAACCAAACATATAAACGATACAATTATAGTAAATCAGCCTCAGTTTACTCCACAACCGGCTCAGGATTCCGGCAGCAATTCCATTCTATCATCATCTTCAATACACTATACAAATTTAAAGTACGAAGACTCTGAAATAGATATTGACAATGATCTGAAGGCAGAAGATGTGTGCGATGAACCTATCGAtcaaatcttatttaaaaatgaagaaTTCATGGCGGAAAATGATCCCGTTTCATCGATTACTGACGATAAAGATGTCAACAATGATGAAAGTGTGATTGCATCAGTGGAACAGCACTTGATTAAGAGTGGATTAAACGATGGCAAATATTTGGAATTCGATGTTTTGGACCGTGAAGGTCATGAAACCTTAACATGGGTGGATATAGGAGACGTTgataaagtttaa
Protein Sequence
MESVRCYLCDHEFVEGEEPWLMFEERLREDGKVECSLADLLGTILQKHLEESLAHSALLCDSCNADVLEYENLEKQFFQIRERILNSYKENYTILNLNNIINSTSFTSNILAEQINENKLLITNSQDIDNFTNQEYAGIIDMELVEEVQDDETDLDNPVVLNESTQKHENEGFIDNVDSDITTDNLDFAAFNEHVAQNSLPSGVLNLSDGLVNLDVAEKSIAVPNIPLEEQDIIIYDVKPDQIQHGLVIKPDNCNDLTNFENTDDDDLNFIISSDIFTSDGNCEESQQSAISDIISTNSDNPKETAMTHGPNISPKPVCKKDGESFVCLVCETSSHFERDLLIEHFQTMHNAKFYMCEQCHQGFEKRQELKIHIEIGHKVQCECCERTFANTRLYRIHRRTHYGSGKSYECDVCHKMYISKSILEEHMNTHTGVRPYKCTECPKNFASKYTLLTHIKIHKERPRPYQCDQCHKRFLNQQNLNQHKKLHVSVKAFQCDICNKAFTTQHSLQVHKVVHSGQRPFICRICGKSFARRPEIQDHERIHTGEKPFKCDFCPMAFAQRTNLATHKKSTHYNEKLHKCDICLRSFKRKRLLDYHIQAIHTGERPHKCDICGSGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIVNQPQFTPQPAQDSGSNSILSSSSIHYTNLKYEDSEIDIDNDLKAEDVCDEPIDQILFKNEEFMAENDPVSSITDDKDVNNDESVIASVEQHLIKSGLNDGKYLEFDVLDREGHETLTWVDIGDVDKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-