Basic Information

Gene Symbol
stc
Assembly
GCA_030765065.1
Location
CM060987.1:161560716-161606212[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 1.4e+05 -4.1 1.6 15 19 500 504 499 504 0.81
2 15 0.071 4.9e+03 0.5 0.4 4 10 533 539 532 539 0.95
3 15 1.6e-06 0.11 15.3 12.9 3 19 551 567 550 567 0.91
4 15 9e-07 0.062 16.2 15.3 1 18 603 620 603 621 0.97
5 15 2.1e-09 0.00015 24.6 12.7 1 19 635 653 635 653 0.96
6 15 1.3 9e+04 -3.5 0.3 5 10 684 689 684 690 0.89
7 15 1.7e-07 0.012 18.5 13.0 4 19 702 717 695 717 0.87
8 15 1.3 9.3e+04 -3.6 2.0 5 10 746 751 746 751 0.93
9 15 0.00049 34 7.4 8.4 1 11 757 767 757 768 0.97
10 15 2 1.4e+05 -4.2 0.7 4 10 772 778 772 778 0.86
11 15 5.5e-09 0.00038 23.2 16.7 1 19 784 802 784 802 0.98
12 15 1.4 9.7e+04 -3.6 1.0 6 10 831 835 830 836 0.77
13 15 2 1.4e+05 -8.0 12.7 10 19 849 859 838 859 0.69
14 15 4.4e-07 0.03 17.2 10.8 1 16 895 910 895 921 0.89
15 15 3.3e-07 0.023 17.6 15.4 1 19 927 946 927 946 0.97

Sequence Information

Coding Sequence
ATGGCAAATTGGAACAATGCCTATTACGGAAATGGAGATAGTCAGAATTATAACTACGTTCCTTCATTGGTGGCTGGGAATAATGATGTCTTAGGTGATGCAGCATCAAGTTGGAATTACTACCCCGTTCCAGGTGTTCCCCTCTTAAATGTGCATCCTTTTCCGAGTTCTCCCTCCCAAGAATGCCTTACAGCACCAATAGCTGCTCGGCAGGGAACAGGAACAGATTTGACGTGGGGATATGGGAATGGCACCGATTATGCAGCCGCGTATGGACCTAGTGAGGCTAGTTTGGCTATAGCTGCGGCATCTTCACTGACTCCAACAGCAGGTGAATTTGTTCCCAGACAGACATTTTCCCAGACCGGAGAACATTCCCAAAGAACTTTGCAGAGTAATGACAATAAAGCACCACCTGTAGAGCACAGGTTTAGTAACTCAAGACAAAGCAGAGACTGGAACAATCAGGCAAACAGAAGACAAAATGGCAGTGACTTCAAACGTCCTAATTCACGTAGTACATATGGATATAATCGGGAGAATACTAATAATGGACGTAAGGGAGGTGGTTGGTTTGGGAGTTCAAATTCCAATTCCAAGTATCCATCCATGGAGGATGTTAAAAGCCAGGATCGTCAGAGATTGCTTGCAGAAGCTGCAGCATTTTTGTCCCCATCAGCCAATAATGCTTCAAGTGCAGCTTCCCGTGAACCTGTTGAAAATGGAGAAACAAAGTCCAGTAATACTAGGGGATCTATTGCATCACGCCCTAGAGGTCAGGAGCAGCAAAGTCATCCACGAGCTCAAGAATACAACAGAGTCTTTACAAACTCTGGAAGATATAATAATAGCAGTGCTTCTTTGAAGAGTTCTGCTACTCAAGATTCTGAAGGAGCAAATTATTCCAAGAGGTGGAGCTTTGATAATTTTCATAAGAATCAGggtcaaaggggcagtgcaaatGACTATCAGCGAGGCAGCACAAATGAATATCATCAACGGGGTAGTGCAAATGAACATTATCAACGCAGCAGTGCAAATGATCTGCGGGGCAGCACAAATGAATATCATCCATGGAGCAATGCAAATGATCAGCGAGGCAGTGCAAATGAATATCATCGATCCAGTGGAAATGAACATTATCAACGGGGTGGTGCAATTGAATATAATTCTGCAAGAAATGCCAATAACATAGATGGTAAACATTTTCGTTCTACAGCTGTACGGCATCCAACTAATGGTGCACCTCCTCGTGTATCACCAAAAAGGGATTCACAAAAGTATGGAAGCAGTGGCAACAATATAGTAGATGATGATGCAAGCCAGCGTGAGAGACTATCAGAACAACTTTCTCGTGGAACGCTGGAATGTCTTGTATGCTGTGAACGAGTTCGCCAGTATGATCCAGTATGGAGTTGTTCAAATTGCTACCATGTTCTTCATCTAAAATGCATCAAAAAGTGGGCCAAATCTTCTAAAGCAGAATCTGGATGGCGCTGTCCAGCATGTCAGAACGTGACCCAAGAGATTCCACATGAATATCACTGCTTCTGTGGAAAAGTGCTCGACCCTGAGTGGAATCGCAATGATGCAGCTCATTCATGTGGCGAGGTCTGTGGACGTTCAAGGAGCGACAAGAGAGCTGACTGTACACATCGCTGCACACTACTATGTCACCCAGGCCCATGCCCCATTTGTACTGCTCAGGTCACTCGgaGCTGTGGATGCGGCAAGTTGCGGAAAGTGGTGAAATGCGGATCAGATCAGGCTCTGCTGTGTGGTGAGAAGTGTGGCAAGGAGCTAAACTGTGGTCTACATCACTGTACCAAAACCTGTCATGTCGGTGAATGTCCAGACTGTGAACATCTGGTGCAGTTAGGCAAATGTGAGCGACCTCTGGCCTGTGGTAACCATAAGTGTGAGCAGGTATGTCATTCCGGGTCATGCATTGAATGTCAGCTGACACCAGACAAGGTGACACATTGTCCATGTGGCAAGACTGCTCTCAGCAAGGACCAGGCCAGATCTAGTTGCAAAGATCCTATACCAACATGTTCGCTTGTTTGTGGCAAGAAGCTTTCATGTGGACAGCCAGCTTCGCCCCATACTTGTGAACAGCTGTGTCACACAGGACCTTGCGCAGCATGTCCTCGGTCAACAATGGTAAGATGTAGATGTGGCAACATGGATCGTGAGATACCTTGTGGTGAACTCACCACAAAAGCAGATGATGCCAGATGCGAGAAAAAGTGCACAAAGAAAAGATCATGTGGCAAACACAAATGCAATCAGCTGTGCTGTATTGATGTGGACCATGTTTGTCCTCTTTTATGTAACCATCAGTTGACCTGTGGACAACATCGCTGCGAGGAACCTTGTCATAGGGGCCATTGCCGCCCATGTTGGCGAACCAgtTTTGAAGAGCTGTACTGTGAGTGCGGTGCCAGTGTAATAATGCCTCCAGTGCCATGTGGAACACGACGTCCTGAGTGCTCTAAGCCATGTTCTCGTCCACATTCCTGCGAACATCCAGCGCTGCATAACTGCCACAGTGAACCACAATGTCCACCTTGCACTGTACTCACGCAGAAGTGGTGCTATGGAAAGCATGAGCTGAGGAAGAGTGTGCCTTGTTACATGACAGAACTATCTTGTGGGTTGCCCTGTAATGTGCCCTTGCCATGTGGACGACACAAGTGTATACTCCCTTGTCACAAGGGGTCATGTCTCAAGGAAGGCCAGCTCTGTACACAGCCATGCACCATGCCGAGACCGTTGTGTGGTCACAACTGTGCTGCTCCCTGTCACGAAGGACCTTGTCCAGACACTCCATGCAAAGTAACAGTTAAGGTAACCTGTGAATGTGGACATCGTTCAGCAAGCAGGGCATGCTCAGACAATGCAAAGGAGTATCAGCGTGTAGCCACATCGCTTCTAGCCTCAAAGATGGCTGACATGCAACTTGGTCATTCTGTAGACATTGGTGATGTGCTGGGCAATCCCTCAGCTAGAAAAATGGCCCTCAAAACGTTGGAATGCACTGAGGAATGCCGTGTTATAGAAAGAAACCGTCGTTTGGCAATTGGCCTGCAGATTGTGAATCCTGATTTGAGTGCTAAGCTGACACCGCGCTACTCTGACTTTATGCGACAGTGGGCCAAGAAAGATCCCAACTTCTGTAACATGGTGTATGAGAAGCTTTGTGAACTAGTACAGTTGGCAAAACAGGTAACTATTGCCCCATGA
Protein Sequence
MANWNNAYYGNGDSQNYNYVPSLVAGNNDVLGDAASSWNYYPVPGVPLLNVHPFPSSPSQECLTAPIAARQGTGTDLTWGYGNGTDYAAAYGPSEASLAIAAASSLTPTAGEFVPRQTFSQTGEHSQRTLQSNDNKAPPVEHRFSNSRQSRDWNNQANRRQNGSDFKRPNSRSTYGYNRENTNNGRKGGGWFGSSNSNSKYPSMEDVKSQDRQRLLAEAAAFLSPSANNASSAASREPVENGETKSSNTRGSIASRPRGQEQQSHPRAQEYNRVFTNSGRYNNSSASLKSSATQDSEGANYSKRWSFDNFHKNQGQRGSANDYQRGSTNEYHQRGSANEHYQRSSANDLRGSTNEYHPWSNANDQRGSANEYHRSSGNEHYQRGGAIEYNSARNANNIDGKHFRSTAVRHPTNGAPPRVSPKRDSQKYGSSGNNIVDDDASQRERLSEQLSRGTLECLVCCERVRQYDPVWSCSNCYHVLHLKCIKKWAKSSKAESGWRCPACQNVTQEIPHEYHCFCGKVLDPEWNRNDAAHSCGEVCGRSRSDKRADCTHRCTLLCHPGPCPICTAQVTRSCGCGKLRKVVKCGSDQALLCGEKCGKELNCGLHHCTKTCHVGECPDCEHLVQLGKCERPLACGNHKCEQVCHSGSCIECQLTPDKVTHCPCGKTALSKDQARSSCKDPIPTCSLVCGKKLSCGQPASPHTCEQLCHTGPCAACPRSTMVRCRCGNMDREIPCGELTTKADDARCEKKCTKKRSCGKHKCNQLCCIDVDHVCPLLCNHQLTCGQHRCEEPCHRGHCRPCWRTSFEELYCECGASVIMPPVPCGTRRPECSKPCSRPHSCEHPALHNCHSEPQCPPCTVLTQKWCYGKHELRKSVPCYMTELSCGLPCNVPLPCGRHKCILPCHKGSCLKEGQLCTQPCTMPRPLCGHNCAAPCHEGPCPDTPCKVTVKVTCECGHRSASRACSDNAKEYQRVATSLLASKMADMQLGHSVDIGDVLGNPSARKMALKTLECTEECRVIERNRRLAIGLQIVNPDLSAKLTPRYSDFMRQWAKKDPNFCNMVYEKLCELVQLAKQVTIAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01411157;
90% Identity
-
80% Identity
-