Dtru059812.1
Basic Information
- Insect
- Deroplatys truncata
- Gene Symbol
- -
- Assembly
- GCA_030765065.1
- Location
- CM060983.1:132439544-132477710[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.22 1.5e+02 5.9 0.3 3 22 300 319 298 322 0.89 2 12 2.8 1.9e+03 2.5 3.9 1 22 448 469 448 472 0.89 3 12 0.34 2.3e+02 5.4 0.8 3 21 485 503 483 507 0.92 4 12 0.039 26 8.3 2.4 3 19 530 546 527 548 0.92 5 12 0.5 3.3e+02 4.8 0.1 1 23 568 593 568 593 0.85 6 12 0.57 3.8e+02 4.7 0.2 1 22 599 620 599 623 0.89 7 12 0.2 1.3e+02 6.1 1.3 2 23 639 661 639 661 0.95 8 12 0.00011 0.077 16.3 0.0 2 21 667 686 666 687 0.95 9 12 1.2 7.8e+02 3.7 0.3 1 19 701 719 701 723 0.83 10 12 0.00013 0.086 16.1 0.9 1 23 751 772 751 772 0.99 11 12 7.4e-05 0.049 16.9 4.3 2 23 779 801 778 801 0.95 12 12 0.17 1.2e+02 6.3 1.7 1 23 808 830 808 830 0.98
Sequence Information
- Coding Sequence
- ATGGAGGGCGATGAAGACGATGACACCCATATTTGTCTCAAATGTCGCACCACCATACATGGTTTGGACAACTACGTGAAGCATCGCAAAGCCGGCTGTGTCAGGAGCGTGGTGGAATCCAAGCCCCATCATGATCCATCAGCCACTGCGACACAGAATGATAAATCCGACACTCCATCTACAGAACCTGGTCTCCGGGCCGATGATTTCTTCTCCTCGCTCGAGCTACAGAGCAGTTCAAAGAAGCCGGTATCATCCCCTGGATCCGCCAGGGGGCCAGGGATGGTCACCCGTCGCAAAGCCTCTGTGCTAGCCGGGAGTGCCAACAAACCTGACAGCGGCAGCGAGCTTCAAGAGTGCACCGATTCCGCCCCACAGCTGATCGAGGAAAGCATCGTTGTGAAACCTGTAGACGAGGAGGAAGACTTCGTATGTGAGGATGAATCAGAGTATGAGTACGAGGATGAGGACGGCGATGAGATGTATCCGCCAAGGTCGCACACCGGGGGCAAGTGGAAACCTGGCTCTGGCTTCATGAATAGGGCACCATCGCCATCGTGGACGCGATCAAGTACAACGCCTGCCGCGACATCATCGTCGGTACATCAAGGAGAATCGTGGAGCTTACTGCTAGATGATGGGGGTGGCAGGGATGCTCCACCACCTCCAAGTTTCACTGGAGGCAAATGGAAACCAACCGGGATGCCTAGTCACGATTTGCCCACATCTGTTGTTGATCAGGACTCGAGAGTGGCCTCAGCAGACGAGGATGAAGATCACCAGGAGACCATGAGACCAGGCATGCACCCGCCTCCTCCTGGGCACACCAGTGGTAAGTGGGTACCTGCTGGAGGCGGTGGGAGTCTCCGCAAGTCGGGAAGCACGGTACAGTATTGGTGTGGATCCTGCAATCGCAGCCTCAGTTCTAGGACACTGTATGATCGTCACATCCTATCTGAACTCCACtttaagagaactttacaggagCGTGAGCTAGAGGACCAAGAACAAGACCAGGACCAATATGTAAAGCGTCGTAACATACGTCGTACAGAAGCGTACATCAACAGTGAGCTCTGGTCCCGCAGCAAAAGAAGTCGCTTGAGGCGCCTGCAAGGCAAGTTTTCAGAAGGTGAAGATGATGACGGTTCTGGGCCACGACAGAAGAAACTGGTGCACCGCAAGCCAGTTCGTTGTGAGGTATGTCGCACTCGAGTGTGGCATCACTTGCTGGGCAAGCATTTGGTGTCGCATTATCATCGTCGTAAGGCCCGTCAGTCGGATTCCGACACCACCAAACTTGTGCTCGAGAACATCCACAGCATAGTGAGACAGGCTCCCTTCCAGTGTGGACCCTGCAAGTTTTACTGCAACACTCGAGAGCATTTTCGGCGACACTGGGAGTCCGCAGAACACGCTTCAGTGGATCTGCAGGTACCTGGAAGTTACTGGTGCTCTTTGTGTAAGCATGGGTGTAGCACATCGATGGAGATGCAGGCTCACATCGAGGGTGCAATGCATCAGGAACTGGTGTCAGTTATAAATGGTTCTGTCCCCGTGGTCATCAGGAAGAGGACTTTCGTGTGTTGCAGTGAATGTGGTGCACGTTTTGTCTACAATCTGCAACTACGACGGCATTGTCTTCAGACAGGACATCGTCTGGAAGAGAAGAGCACAGCTTCCGATGAGTATCAATCAAGATTTCCTTGCTCCGAGTGCAGTGGCATGTTCGTGGCTTCGTCAAGGTTCGCTCTGCAGCGCCACATTATGCTGACTCACCGGGACGGAGGTGCTTATTACTGCAGCAGCTGTTCGCTCAGATTTGGATCAGCCGAAGAAGCGGTGGCTCATCGACAAAGTCAGCAGCACAGGTACTCCGTGATGACGACCAAGCGACCAGAAGATGTAACCAGAACGTGCCAGCATTGTGGTGGCGTCTTCCTCAACGTGCTCAGCCTCAAGCAACATCTTCGACAGCAACACGCCGACTATCTTTCCAAGTGTCCTAATTGTGGGAAAGCTTTCGCACTTCCTCAGGAACTGTCTCGTCATGTACGAGAGAGAGCTTGTGTGTTTGAAGAGAACAAAACTGCGGGGAATCACCGTTGCGGGCAATGTCCTTACAGTACAGATTCTCGAGCAGAGCTTCTGTTTCATGAGGCGCTACATGGTGAACCAGTCCCTGATTCGGAGAATCATAACGACGACGATGACGAGGAAGCCAGTGCTGAAACACGGGCCGCTCCGAGGTACAGATGTCCTCTGTGTCCCAGGGCCCTCAAGAAGTACTCTTTACGTCGTCATCTGAGGATGCACACCTTTGAACCATCATGCGAATGCAACGTATGTCTCAGGACTTTTGTACATCGTTCGTCTCTCGTCAAGCATATGCGACAGATGCACTCTGACAATGTAGAGAAGTTCAAGTGTACCAGCTGTCCTTTCAGCACGCTAAGGAAGGACTCTATGGAACGCCATAGCCTTACTCACTCCGACCAGCGCTCCAAAACCTACCTCTGCGCCGTCTGTGGAGCCAGCTTCTTCATCAAGTGA
- Protein Sequence
- MEGDEDDDTHICLKCRTTIHGLDNYVKHRKAGCVRSVVESKPHHDPSATATQNDKSDTPSTEPGLRADDFFSSLELQSSSKKPVSSPGSARGPGMVTRRKASVLAGSANKPDSGSELQECTDSAPQLIEESIVVKPVDEEEDFVCEDESEYEYEDEDGDEMYPPRSHTGGKWKPGSGFMNRAPSPSWTRSSTTPAATSSSVHQGESWSLLLDDGGGRDAPPPPSFTGGKWKPTGMPSHDLPTSVVDQDSRVASADEDEDHQETMRPGMHPPPPGHTSGKWVPAGGGGSLRKSGSTVQYWCGSCNRSLSSRTLYDRHILSELHFKRTLQERELEDQEQDQDQYVKRRNIRRTEAYINSELWSRSKRSRLRRLQGKFSEGEDDDGSGPRQKKLVHRKPVRCEVCRTRVWHHLLGKHLVSHYHRRKARQSDSDTTKLVLENIHSIVRQAPFQCGPCKFYCNTREHFRRHWESAEHASVDLQVPGSYWCSLCKHGCSTSMEMQAHIEGAMHQELVSVINGSVPVVIRKRTFVCCSECGARFVYNLQLRRHCLQTGHRLEEKSTASDEYQSRFPCSECSGMFVASSRFALQRHIMLTHRDGGAYYCSSCSLRFGSAEEAVAHRQSQQHRYSVMTTKRPEDVTRTCQHCGGVFLNVLSLKQHLRQQHADYLSKCPNCGKAFALPQELSRHVRERACVFEENKTAGNHRCGQCPYSTDSRAELLFHEALHGEPVPDSENHNDDDDEEASAETRAAPRYRCPLCPRALKKYSLRRHLRMHTFEPSCECNVCLRTFVHRSSLVKHMRQMHSDNVEKFKCTSCPFSTLRKDSMERHSLTHSDQRSKTYLCAVCGASFFIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411089;
- 90% Identity
- iTF_01411089;
- 80% Identity
- -