Dtru062842.1
Basic Information
- Insect
- Deroplatys truncata
- Gene Symbol
- -
- Assembly
- GCA_030765065.1
- Location
- CM060984.1:8362622-8372950[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.7e-05 0.012 18.9 3.3 1 23 204 226 204 226 0.98 2 10 0.11 76 6.9 0.5 1 19 230 248 230 250 0.95 3 10 6.5e-07 0.00044 23.4 1.9 2 23 265 286 265 286 0.97 4 10 0.0083 5.5 10.4 1.3 2 22 291 311 290 311 0.94 5 10 0.00038 0.25 14.7 3.1 1 23 319 341 319 341 0.97 6 10 0.19 1.3e+02 6.2 0.0 1 20 345 364 345 366 0.91 7 10 0.035 23 8.5 1.1 2 23 380 401 380 401 0.95 8 10 0.036 24 8.4 1.9 1 19 405 423 405 426 0.83 9 10 0.0051 3.4 11.1 0.5 3 23 432 452 430 452 0.91 10 10 0.67 4.5e+02 4.4 0.5 1 13 457 469 457 473 0.85
Sequence Information
- Coding Sequence
- ATGACAAGTATAGTAATAGCAAATCTAACACCACAGTTTACCCAAAATGGGGCACAAACTATATTTGTTACCAACACAAACGAGGTGTTTCCAGATGCACTGTCGGCCGATGGCGAGGTTAACGACAGCCAGAACGAGGCTCTGAATGTCCTTCTGGAACAGCTTCAGTCCGAGAGTGCTTTCACCACAGGCAGCAATGCCTCGAAAGATAGCGCAGACTCTAGCGGGAATCACAGCAGCGATATTCTCACTACTTCGTCAAACTTTGCTTCAGCCGTTATAGAGAATTGCGAAGACATCGGAAATGACTTATTAACTAAAATACAGTTACAAACGGATGAAGTTTTACATTCAGACAGGGACAAACCTGAACAGCAGATTCAGGTTAATAACAATGAGTTTCTGAACACGTTTCAGTCATGTAGTGATGAAGTTGTGTCAGAGCGTACGCAGAGTAATGAGAAAGATAACTGTACCAAAGACACACAGAATACCTCACTTCTAAACCTTATATCCTGCACAGACCTTGAAGAGGAATCCAAACCGTCCGACGATGTGGACACAGGTTTTATTGCTTCCGATGACAAATCATCAGATATTGGGCCCCCGTATAACTGCGACATCTGCAATAAGGAATTCCACAAGGCAGATTACCTTTACCGACATCTGCGCAAGCATACGGGAGAATTCACATGTGTCTCTTGTCTGGCCGTGTTTGCCCGCAAGGAGAGTCTTGTGAACCATTCCTGCTTTATCGATAataacagccaatcagaaaacaaGTCATCACGCACATGCCCCTACTGCCAGAAAGTTTTCCGTATGAAGAAGCTGCTGAAGAGGCATATGGCAAAACATACAGGAGAATGGAAATGTAGCAGTTGTCAGCGGATATACTCGTCCAGAACAACGCTAGCTGCACACAGATGTACGAGCAACAAGACGACGCAGATGTATCATTGCCAAGTGTGCAGTCGAGAATTCCTGCGCCAGAGTTACCTCAACAAGCACATGCTACTGCATAGGGAACTCCATCCTTGTGGCACTTGCGGCAAGAAGCTGCCAGTCGGCGAGGCTCTTACAGTGCACCAGGACTACTGTTCACAGGAGAAGCTGCTGGAGACAGCAAGAGAGGCCACATGTCCCAACTGCAGTACGACATTTGTACATGTGTTGACGTACAGACAGCATGTCCTCGAGCACACGCACCCATTCCTGTGCCAGCAGTGTGGTCGAAGATTCTCCACCAACGAAACCAAAGTGCTACACAGCTGCACCAATAAGATGCTGCTGTGTGATTTGTGTCTCAAGAGCTTCTCGCACATGTCCGAACTTGTACAACACAACGCAGCACACGGTGTCCCCCAGTTCCACTGTTACGAGTGTGGCAACAGCTTTCATCACAGCGTGAgttggattttaattttgaaagttaAAAATATTGATAGCTAG
- Protein Sequence
- MTSIVIANLTPQFTQNGAQTIFVTNTNEVFPDALSADGEVNDSQNEALNVLLEQLQSESAFTTGSNASKDSADSSGNHSSDILTTSSNFASAVIENCEDIGNDLLTKIQLQTDEVLHSDRDKPEQQIQVNNNEFLNTFQSCSDEVVSERTQSNEKDNCTKDTQNTSLLNLISCTDLEEESKPSDDVDTGFIASDDKSSDIGPPYNCDICNKEFHKADYLYRHLRKHTGEFTCVSCLAVFARKESLVNHSCFIDNNSQSENKSSRTCPYCQKVFRMKKLLKRHMAKHTGEWKCSSCQRIYSSRTTLAAHRCTSNKTTQMYHCQVCSREFLRQSYLNKHMLLHRELHPCGTCGKKLPVGEALTVHQDYCSQEKLLETAREATCPNCSTTFVHVLTYRQHVLEHTHPFLCQQCGRRFSTNETKVLHSCTNKMLLCDLCLKSFSHMSELVQHNAAHGVPQFHCYECGNSFHHSVSWILILKVKNIDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -