Basic Information

Insect: Deroplatys truncata
Gene Symbol: lrfn1l
Assembly: GCA_030765065.1
Location: CM060986.1:8431156-8491071[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0011 0.74 13.2 6.4 3 23 554 574 552 574 0.97

2 9 5.5e-05 0.037 17.3 2.8 1 23 580 602 580 602 0.97

3 9 3.7e-05 0.025 17.8 2.7 2 23 610 631 609 631 0.96

4 9 0.0064 4.3 10.8 3.7 1 23 637 659 637 659 0.95

5 9 0.0018 1.2 12.5 4.0 2 23 666 687 665 687 0.96

6 9 2.2e-05 0.015 18.5 0.1 1 23 693 715 693 715 0.99

7 9 0.00012 0.078 16.3 6.0 1 23 721 743 721 743 0.99

8 9 0.0021 1.4 12.3 1.7 1 23 749 771 749 771 0.95

9 9 9.9e-06 0.0066 19.6 0.7 1 23 777 799 777 799 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0011	0.74	13.2	6.4	3	23	554	574	552	574	0.97
2	9	5.5e-05	0.037	17.3	2.8	1	23	580	602	580	602	0.97
3	9	3.7e-05	0.025	17.8	2.7	2	23	610	631	609	631	0.96
4	9	0.0064	4.3	10.8	3.7	1	23	637	659	637	659	0.95
5	9	0.0018	1.2	12.5	4.0	2	23	666	687	665	687	0.96
6	9	2.2e-05	0.015	18.5	0.1	1	23	693	715	693	715	0.99
7	9	0.00012	0.078	16.3	6.0	1	23	721	743	721	743	0.99
8	9	0.0021	1.4	12.3	1.7	1	23	749	771	749	771	0.95
9	9	9.9e-06	0.0066	19.6	0.7	1	23	777	799	777	799	0.95

Sequence Information

Coding Sequence: ATGGTGCGGGACACTAGAGGTGTCTGGGTAGGTCCAGTAGTGtgtcgggtcttcgagccacgATCTGAGGTAGGTCGCAATGCGCTTTGGGGTCGTGCTTGGATATACTTGTCACTTTTATTGCAGCAATTTGCTCTGGAAGACGTGGGGACGCTGCAAGACGTAGACCTCAGCGACAACCAGCTCACGTCTCTCAGAGATGGTACGTTCCGACGCCTGGAACACTTGCAGACGCTCAACCTGACAAGGAACCTCATCGTCCACATTCACAGAGACATCTTCGGCGGATTACGGAACCTTCGCAGACTCCACATGGACGATAATCTTGTGGACATGTTGCCAGCGCGGGCGTTCCTCACGCTATGGAGACTTGAGGTGTTGTCCCTTGCAGACAATAGGGTAGAGGTTGTGGAGGGCGAGGCGTTCGCCGGACTCTTCAACATGCATCGCCTTCACTTGCAGGGAAACAGAATATCGGTACTAAGCAACAGGACGTTTCGAGGGCTCGACAAGTTACAAATCCTGGATCTAAGCCACAATCTGCTGACGTCATTGGAGCCTGGAGTGTTCTTCAGTGTGAGTCATCTGGTGGAGCTACATCTGAACGACAACCAGCTGCAGGAGGTTACCAGCAACATGTTCATCACTCAGGGGGACCTCATCCTTCTACTCATGCAGCACAACAACATTACTGTGCTTGAGATTGGAGCATTTGTTGGACTGCGCAGTCTGCAGGTGCTGAGACTGGACAACAATAGGATAGAACGTTTGTGGAGAGGTGTACTTGAAGGCAGTCAACTTGAGGAACTGTATCTTGGTGACAACCATggtcTAGAGATACTACAACATCTGAACCTGAGTGGTGGCACTACACAGACACTACAAGAGCAAGGAGTATCTAATCTGACACTTGTGACACTAGATGTCAGCAGGAACAGGCTCCAGTCTATCAGCAACAGGAATGTTGCCTGTGCACACAAGCTTGTGGCCTCACACAACAGACTGACACATGTGGAGTTGTTTGAGTGTCAAGATACACAAGATCTGGTGTTATCGCACAACAGTCTCACCGAACTGCAGCCAGATATGTTACCACCACAACTGGAACACCTGGATTTGTCTCACAACCTACTCTCAACAGTGCTCTTCCCACCCAGCGACATTCTCAGGTTGGTTTATCTTGAAGACTTTGGCATGGGCTTGGATAGACTGAGATTCCTAAACTTGGAGGGAAATCAGCTGACATCGCTTGTCTTTGGTATGTTTACTGTGATGCCGTCTGTGGAGTGGTTGTCACTGAGACGTAACAGACTCTCCAAACTGGGGTCCACCGTGTGGGACATGTTCCCCAACCTACAGGCAAGTACACATCACTACAGTTATATAAATGTGAAAGCAAACTGCTGGAGGCCCGCTAATGTGTTTGGTCAGGAGTGGGGGGAAGTCCTGACAAATGTTCAGTGTGATGCAGAGAGTCACATGGTTACGAGGAGTGCTGGTGTCATGGAACGTGATCTCATCTTTCTAGGGGGCATATTCCTCCTAGCCGTGCTATTTGGTCTTGGATTCTGTCTCATTGCTACGAACACGATATTGTCGTGTGGAGCAGACCTGAAACATCGCAAACGTGGCCGCAAGCCTTCAAACATTCCTACTGACTGTGATATCTGTAACAAACACTTCCGTAAGCTGTGTGACCTCAAGAGACATAAACTCACACATACTGGGGAGAAGCCCTTCGTGTGCGAGTCGTGTGGCAAGTGTTTCTCTCAGTCAACTCGATTAAACAGCCACAAGCTTGTTCACACAAGCAGTGATAATCGTTGTATCTGTGATCTCTGTGGCAAAGGTTTCTTCTACAGCTCCGACCTAAACAGGCACAAGAAGAGTCACAAGGGGGCAAAGCCCCACATGTGTGACATTTGTCACAAACGCTACAAGGACCCTCTCCGTCTGCAGAACCACAAACTGCTACACAACAGCAAAACACCACTGCAATGCACGTTTTGTCAGAAGGCATTCAACTACACATGTGACCTGGAACGCCACCAGTTCTCGCATCTCAACGTCAAGCCATACAAGTGTGAGATATGTGGGGCAGGATATGTGAAACTGAGttacctcaagatacacataGCGACACATGCCGAGGGACGTTCTTATACATGTGACATCTGCAAGAAGCAGTTTGCCTTTCACTTCCATCTCAAACAGCATATTCTGACACACACTGGGGAGAAGGCCCATGCATGCGACATTTGTGACAAGCGTTTCCTCAAGGTTTCAGACTTGAAGCGTCATAAAACAGTTCACCTTGGTGTCAAGCCGTTTGCATGCGACGTGTGTGGTAAATTCTTCTCGAGGGCAAGCTACGTTCAGAAGCACAAGCTACTTCATTGTCCTAGGGACTCTGCCTTTCTGAGAAAGTAG
Protein Sequence: MVRDTRGVWVGPVVCRVFEPRSEVGRNALWGRAWIYLSLLLQQFALEDVGTLQDVDLSDNQLTSLRDGTFRRLEHLQTLNLTRNLIVHIHRDIFGGLRNLRRLHMDDNLVDMLPARAFLTLWRLEVLSLADNRVEVVEGEAFAGLFNMHRLHLQGNRISVLSNRTFRGLDKLQILDLSHNLLTSLEPGVFFSVSHLVELHLNDNQLQEVTSNMFITQGDLILLLMQHNNITVLEIGAFVGLRSLQVLRLDNNRIERLWRGVLEGSQLEELYLGDNHGLEILQHLNLSGGTTQTLQEQGVSNLTLVTLDVSRNRLQSISNRNVACAHKLVASHNRLTHVELFECQDTQDLVLSHNSLTELQPDMLPPQLEHLDLSHNLLSTVLFPPSDILRLVYLEDFGMGLDRLRFLNLEGNQLTSLVFGMFTVMPSVEWLSLRRNRLSKLGSTVWDMFPNLQASTHHYSYINVKANCWRPANVFGQEWGEVLTNVQCDAESHMVTRSAGVMERDLIFLGGIFLLAVLFGLGFCLIATNTILSCGADLKHRKRGRKPSNIPTDCDICNKHFRKLCDLKRHKLTHTGEKPFVCESCGKCFSQSTRLNSHKLVHTSSDNRCICDLCGKGFFYSSDLNRHKKSHKGAKPHMCDICHKRYKDPLRLQNHKLLHNSKTPLQCTFCQKAFNYTCDLERHQFSHLNVKPYKCEICGAGYVKLSYLKIHIATHAEGRSYTCDICKKQFAFHFHLKQHILTHTGEKAHACDICDKRFLKVSDLKRHKTVHLGVKPFACDVCGKFFSRASYVQKHKLLHCPRDSAFLRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -