Dalb032129.1
Basic Information
- Insect
- Dermolepida albohirtum
- Gene Symbol
- -
- Assembly
- GCA_031893035.1
- Location
- JAVIWB010006071.1:70288-73410[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.3e-05 0.0078 17.7 0.1 2 23 86 108 85 108 0.96 2 11 0.0079 1.4 10.5 4.6 2 23 193 215 193 215 0.91 3 11 4.7 8.5e+02 1.8 7.6 3 23 373 394 372 394 0.95 4 11 0.32 59 5.5 0.3 3 20 453 470 451 474 0.83 5 11 0.00031 0.057 15.0 4.3 2 23 533 555 532 555 0.96 6 11 0.032 5.8 8.6 0.5 3 23 581 602 580 602 0.93 7 11 0.0061 1.1 10.9 3.6 2 23 647 669 646 669 0.96 8 11 0.089 16 7.2 3.7 3 23 684 705 682 705 0.92 9 11 0.00017 0.031 15.8 0.7 2 23 754 776 754 776 0.95 10 11 0.48 87 4.9 0.2 1 23 848 870 848 870 0.96 11 11 0.0004 0.073 14.6 0.8 2 23 882 904 881 904 0.92
Sequence Information
- Coding Sequence
- ATGATGACATCAGTCTCTCTGCCCTCCAACTCTGGCCCTTTGCATGCTGGATATTCAAGTGTCGCTGAGGAACCAACGGGTGATTCAGATTTCGAATCTCCGCGAGCGTCGAAACGTTGCCTACCTGTCTCATTAGCCGAATCCTGCAAGAAAAGACGAAAACAATCAACGCCAGTTAGAATCTCCGCCGTCGATTCAGATCCAAATCCGGCAGAAGGTAAGCCAACAACCGTTCCTTCTCCAGAACCCGAATTAAAATGTCCAGTTTGCCAATTAATGTTTGACAACAATGACAAATTAGAATCTCACATCAAAGTCGAACATTCTTTGATAGAATGTAAAAAGGAGATCGAAGATGTACCATCGCAAAATCAAGAAAGATCCAGCACACCGGTCGAATTAACAGCACCCAGATCTGAATTGCCATGGATGACGGAGTTGCAGAACAAGGAATGGCTAAATCCGAATATATTGCCTTTCACGACTACAAATCATATGTTCATGTCTTTATCTCAATATCCTCAAGCTGATACAGTTCCTCCTAGACAACCGATAAGAATATTCAATCCTGATGCTTACTGTGAGTTAtgtaataaagaattttgtaacaaatactttttaaaaacacaCAAAGCCAATAAACATGGTATATATTCAGATCCTCCAACAACAGATTCTTTAGGAAATACCGTAAACGTTCCGTCATATGCTGCGAACATTAAACTCCCAAACACTGTGCCAAGTATTGATGTTAAAAACGAAGTTAAATCACAAGTTACACCGCTGAACCCGTTTTcagatttatttacaaatccctttgcgaataaattattaacgaaGACTTGCAAAGCCATATCCAAGGAACAGGAAATTGATCAAATACCGAATGGCGTAAGCGCACCTCAAGAAACCGAAAGACCCATAGAAGAACCGGTCACAGAAGAATCTTGCAGCCCTCGAATTCAAATGGATCCTACACCGATTAAAAACGAAGTTCTTGACCAAGACGGATTATATTATACATCGCCAAGCAAGATGTCACCCGGCCAACAAGCTAGAGAACTGGATCTATCGAATCGTTTGAGAAGAATAGGCGTCATGAACCCGAAAGCGTTTTGTGAAATATGTTGCAAGGAATATTGCAATAAGTATTTTCTGAGGACACATAAAATGAAGAGACACGGAATATACATACCGGATGAGGGTAAAGATCGAGATGTTAAAGTTGATTCTTTTGGAAACATGTTGTGGTCCCACAATAATACCCAAACAAGTCCTTTAAATCTAATTATGACCGAACAATCTAATTCGAGTTTGCAAAACGAAAGGAAAACATCGTCTCCGGCGGACATATGTTGCGAATTGTGTGGCATTAAATTCCAAAACGCCAGTTTGGCCCAACTGCATAACGTTAGTGTACATTCCAAAGTAAATCCTGCTACACAAGAGGCTTCGAATGGATCGGAAGAGGAGAAAATGGGTGAAATGAATGAAAGGTCAGTAAACGCCAACGACACAATAAGTGAAGACCTTCAAAAATTGCAAACTATGATCCTTCAACTTAACGATTTAGATGTTAATACTAAGACTTCTTGTGTGTGTAGTGTTTGcaataaagaatttgaaaaccGTTACTTTCTGCATACTCATATGATGACAGATCACGGATTGTTATTGGACGATGTTATAGATAACGAGAAATCTTGTGAGGGTGAtaacaacataaataataatacgttgTGTGATTTGTGTGGTAAGGATTTTCAAAACGTTCAAGAAATGAAGAAGCATACCTCAGAATATCATTCGAATCAATCTAACGAGACTAAAGAAGAATTTAATGGATTCACTACACCGGAAAAATCGTCTAGCAGAACCGTAAACAGCGGTCAACTGCCAGAGAGAAGAGCTTCTATGAATTTAACACCCACGAGTAGTTACTGTGAGATTTGTAACAAAGAACTTTGCAATAAGTATTTTATGAAGACGCATATGCAAAGAATGCACGGCATCGAAATCGAAAACGGCGCACAGATTGGTGGTGTTATTTGTGATATATGTAATAAAGAACTGTgcagcaaatattttttgaggGTTCACAAACACAACACCCACGGCATTGTGGAGTACGGACCTAGTTTATTACAGCCTAGAAAAGGCGACGAACCAGCAACACATTTATCGACTGAAACAGACACGTCTTTGAAACCTACGGATTTAGCAGATTTAAGTCACAGGTACTTTACACATTTCACGGAAGTTTGCACGATTTGCAGCAGGAGATTTCGCAGTACGAAATGGTTAAAAGCTCATTTATTAAGCGATCACGGACAGGCGGGAGTTGATAAATGGTCAGAACTTGAACAGCAGCTGCAACATTCAATGAATCAACACAAACCTTCGACGGCGAAAAACAGTCCCCAGTCAGAAAGAGTCAGTCCTACACTGAAAATACCAAATGGTGGTCAAGAAAATCAGAACGTCGGCATACAAAATGTACTATCGAGTATCTTCGGCGACGACGAAAACAATGCTAAAACCTATGACTGTTCGTACTGTCCATTTACTACACCGATACTGCCATTCTTATTTGTCCACGAGCGTTCACACTCTCTGCAATCAGATACTGAGCACGGCCCCTTGAAATGCCCCGTCTGTGGGCAAACGTTCCTACAATCTGAACTACTTCAGCATCACATATTTTCCCAGCATCCGTTTCTTCCCTTGCCTCCTTTCTTTAATGGGAACGCAGAACAACAGGGAGAAATATCGAAAGAACCGTCGGAGAGCGCCGAAGAAATCGAGGATGGTGGGTCGTGTTCCGAAACCAGTAAGCAAGGAAACAAGGGGAAAAAGGTAAGGCGCAAATTCGGCCGGGTAGAGTCATCGGAAACGGGACCATCGTTAAAGGATGTCGCGAAGAGATCACAATTACCTGCGACTTATGCGTTACCACAAATCGAGGAATCTACCTCAAATGCAAACTCTTCATACGTAATGCAAGCTTTCCTTTTGGAGGAATCGGGCTCGGATCGTAGATTTATGCCGTCGTTAGTATTTCTACCGGTGCTACAAAAGCTCTCTGCACCGAACACAGTAACTTTCACACTCACACCTgcctaa
- Protein Sequence
- MMTSVSLPSNSGPLHAGYSSVAEEPTGDSDFESPRASKRCLPVSLAESCKKRRKQSTPVRISAVDSDPNPAEGKPTTVPSPEPELKCPVCQLMFDNNDKLESHIKVEHSLIECKKEIEDVPSQNQERSSTPVELTAPRSELPWMTELQNKEWLNPNILPFTTTNHMFMSLSQYPQADTVPPRQPIRIFNPDAYCELCNKEFCNKYFLKTHKANKHGIYSDPPTTDSLGNTVNVPSYAANIKLPNTVPSIDVKNEVKSQVTPLNPFSDLFTNPFANKLLTKTCKAISKEQEIDQIPNGVSAPQETERPIEEPVTEESCSPRIQMDPTPIKNEVLDQDGLYYTSPSKMSPGQQARELDLSNRLRRIGVMNPKAFCEICCKEYCNKYFLRTHKMKRHGIYIPDEGKDRDVKVDSFGNMLWSHNNTQTSPLNLIMTEQSNSSLQNERKTSSPADICCELCGIKFQNASLAQLHNVSVHSKVNPATQEASNGSEEEKMGEMNERSVNANDTISEDLQKLQTMILQLNDLDVNTKTSCVCSVCNKEFENRYFLHTHMMTDHGLLLDDVIDNEKSCEGDNNINNNTLCDLCGKDFQNVQEMKKHTSEYHSNQSNETKEEFNGFTTPEKSSSRTVNSGQLPERRASMNLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKHNTHGIVEYGPSLLQPRKGDEPATHLSTETDTSLKPTDLADLSHRYFTHFTEVCTICSRRFRSTKWLKAHLLSDHGQAGVDKWSELEQQLQHSMNQHKPSTAKNSPQSERVSPTLKIPNGGQENQNVGIQNVLSSIFGDDENNAKTYDCSYCPFTTPILPFLFVHERSHSLQSDTEHGPLKCPVCGQTFLQSELLQHHIFSQHPFLPLPPFFNGNAEQQGEISKEPSESAEEIEDGGSCSETSKQGNKGKKVRRKFGRVESSETGPSLKDVAKRSQLPATYALPQIEESTSNANSSYVMQAFLLEESGSDRRFMPSLVFLPVLQKLSAPNTVTFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121159;
- 90% Identity
- iTF_00070845;
- 80% Identity
- -