Dalb017708.2
Basic Information
- Insect
- Dermolepida albohirtum
- Gene Symbol
- PRDM9
- Assembly
- GCA_031893035.1
- Location
- JAVIWB010003164.1:32572-39557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.6 3e+02 3.3 1.0 1 20 68 87 68 88 0.95 2 17 0.0031 0.57 11.8 2.8 1 23 164 186 164 186 0.98 3 17 1.9e-05 0.0035 18.8 3.7 1 23 191 214 191 214 0.97 4 17 0.092 17 7.2 10.4 2 23 225 247 224 248 0.95 5 17 0.0018 0.34 12.5 2.3 1 23 307 330 307 331 0.96 6 17 0.00086 0.16 13.6 2.1 1 23 338 361 338 361 0.96 7 17 0.0015 0.27 12.8 2.9 1 23 369 392 369 392 0.93 8 17 0.044 8.1 8.2 0.8 2 23 401 423 400 423 0.95 9 17 0.019 3.5 9.3 5.6 1 23 431 454 431 454 0.94 10 17 0.00054 0.098 14.2 6.3 1 23 460 483 460 483 0.97 11 17 0.004 0.72 11.5 2.9 1 23 491 513 491 513 0.97 12 17 0.03 5.4 8.7 6.2 1 23 521 543 521 543 0.98 13 17 0.0013 0.24 13.0 0.6 1 23 553 576 553 576 0.98 14 17 0.03 5.4 8.7 2.8 1 23 582 605 582 605 0.97 15 17 0.051 9.2 8.0 6.6 1 23 613 636 613 636 0.97 16 17 0.16 30 6.4 1.5 1 23 644 667 644 667 0.97 17 17 0.074 14 7.5 4.1 1 23 675 698 675 699 0.95
Sequence Information
- Coding Sequence
- ATGGCGTACATCAATTCCGTCAGGATCCTTTCGGAAAACAATTTACAGGCATTTCAATATGAAAATAACATGTACTATCGCAGTATCCGTAAAATCATAGAGGGTGAAGAACTATTTGTGTATTTTGGGGATGAATATGGTCTAATTGAAGatactgaaaaaaattttgttcctGCTACAGAGAAGGTCACTGCAAACGTATATGCCTGCACGTTTTGTTGTTTAGGATTTGAATCGGCTATACATTTAGTGAAACACCAAGATTTCTGCTCTAAGAGATCTGATGGAAAATTTTTGATGAACAAAATCGTGCAATGTGCATATTGCAAAATCTACTTGGATAAAAGAGAATATTTAGATTACCACACGAACTATTGCCGTGATAAAAATGCCAGGAATCACATTCTACCAGCATCGATTAGTAGAACAACAAAGGTAAATgaagctttatttatttcaagcaGATGCAAGAAACAAGAACGTGGCATATTCAAATGTGCGTATTGTGAATATAAAACAAGATACAGAAGCGAGTTTAAAGATCACGCAAACAAACACGAAGTGAAAACGTACAAATGCACTACTTGTTATAGAAGATTCAAAAATAGGAAGAGCCTCAAATTGCACATGATTAGGATCCATAGTGACCTtgtggaagaaaaagaaatctgtCAATGTTCTCTCTGTGAATACAAGACGAGATTCAAATCACATTTGAAgacgcatttaaaaaaaaaacatcacgcAGGAGAAGAAGATACTAGTTCACTTGAACACGAAACAAACTACAAATCGTGTTCAGAAGGAAATATAAATGGAAAGCACTGCATGGAAGAGCTAAAACCATCTGAAAGCCCTGAAGATGATTTTCGGAACAAATTGTTCTTGAAAGAATATCGCGGAggtaaaatgaaacaatttaaatgttctGATTGTGAATTCGAAACGAGTAAGAAAGGATATTTAAGacaacatgtaaatataatgcATCATGAAGCGGGACCAAAGCAATTTAAATGTTCTGAATGTGAGTTTGGAACAAGCTATAAATATTACCTAAAAAACCATATAAATCTCAAACATTctgaagaaaaagtaaaaagattTAAATGTTCGCAATGTGATTTCAGAACAAACGATAAATCGTACTTAAGGCAGCACACAGATCTAAAACATCCCACAGAAGGAGTGAAGCGATTGAAATGTCCTAAATGTGAGTTCGAAACGAGTAACAAGCTCAGCGTGAGACAGCATATATATAGAATGCATCGTGAAGgagaaacaaaacaatttaaatgttctGAATGTGAGTTTAGaacaaaacacaaatattatttaaaagaacatgtaaatttcaaacattccgaagttaaaagatttaaatgttCGCAATGtgatttcaaaacaaaacacaaatcatctttaagaaaacatacaaatataaaacatcGTGCAGAGGAATTGGAACAATTTTATTGTCCTGAATGTGAATTCCAAACGAGTTACAAACGCTACTTGAAGAAACATGTATATAGACATCGTGAAGGAGAACCAAAGCGATTTAAATGTTCTCTATGTGAGTTCAGAACAAACTACAAATCGTGTTTAAGAAAGCAtacaaatttacatataaaacgtGCAGAGGAaacgaaacaatttaaatgtcctgaatgtgaGTTCGAAACGAGTTATATTCTTTCTTTGAGAAAGCATATTAATACCAGTCATGGAGAACCGAAGcgatttaaatgtcctgaatgtgaGTTCGAAACGAATTGCAAACGTAATTTGAGACAACATATATTGAGAATGCATCGTGAAGGAGAAccaaaactatttaaatgttCTCTATGTGAGTTTGAAACCAACTACAAACATCATTTAAAGAATCACACAAATATAAAACATCGTGCAGAGGAAGCAGTGCAATTTAAATGTCTTAAATGTGTGTTCGAAACGAATTCCAAGCAATATTTGAGTGAACACGTAAAGAGAATACATCGTGAAGGAGAACCAAATCTGTTTAAATGTTCTGAATGTGACTACGAAACAAACTACAAACGTCAATACAAGGGTCATACAAGTATAAAACATCACGCATTTTAA
- Protein Sequence
- MAYINSVRILSENNLQAFQYENNMYYRSIRKIIEGEELFVYFGDEYGLIEDTEKNFVPATEKVTANVYACTFCCLGFESAIHLVKHQDFCSKRSDGKFLMNKIVQCAYCKIYLDKREYLDYHTNYCRDKNARNHILPASISRTTKVNEALFISSRCKKQERGIFKCAYCEYKTRYRSEFKDHANKHEVKTYKCTTCYRRFKNRKSLKLHMIRIHSDLVEEKEICQCSLCEYKTRFKSHLKTHLKKKHHAGEEDTSSLEHETNYKSCSEGNINGKHCMEELKPSESPEDDFRNKLFLKEYRGGKMKQFKCSDCEFETSKKGYLRQHVNIMHHEAGPKQFKCSECEFGTSYKYYLKNHINLKHSEEKVKRFKCSQCDFRTNDKSYLRQHTDLKHPTEGVKRLKCPKCEFETSNKLSVRQHIYRMHREGETKQFKCSECEFRTKHKYYLKEHVNFKHSEVKRFKCSQCDFKTKHKSSLRKHTNIKHRAEELEQFYCPECEFQTSYKRYLKKHVYRHREGEPKRFKCSLCEFRTNYKSCLRKHTNLHIKRAEETKQFKCPECEFETSYILSLRKHINTSHGEPKRFKCPECEFETNCKRNLRQHILRMHREGEPKLFKCSLCEFETNYKHHLKNHTNIKHRAEEAVQFKCLKCVFETNSKQYLSEHVKRIHREGEPNLFKCSECDYETNYKRQYKGHTSIKHHAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -