Dalb025241.1
Basic Information
- Insect
- Dermolepida albohirtum
- Gene Symbol
- ZNF236
- Assembly
- GCA_031893035.1
- Location
- JAVIWB010004624.1:35210-48324[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00026 0.048 15.2 0.7 3 23 11 31 10 31 0.97 2 13 0.014 2.5 9.8 0.2 1 23 37 59 37 59 0.96 3 13 0.0016 0.28 12.8 0.7 1 23 70 92 70 92 0.96 4 13 6.4e-07 0.00012 23.4 3.8 1 23 117 139 117 139 0.98 5 13 5.6e-07 0.0001 23.6 0.9 1 23 145 167 145 167 0.96 6 13 0.00032 0.057 14.9 0.4 1 23 173 196 173 196 0.96 7 13 0.00074 0.13 13.8 1.8 1 23 206 229 206 229 0.97 8 13 3.3e-07 6e-05 24.3 0.5 1 23 309 331 309 331 0.98 9 13 2.2e-05 0.0039 18.6 1.3 1 23 337 359 337 359 0.99 10 13 5.6e-05 0.01 17.3 2.5 1 23 365 387 365 387 0.99 11 13 0.0022 0.4 12.3 0.6 1 23 398 420 398 420 0.98 12 13 0.00013 0.023 16.2 3.1 1 23 476 498 476 498 0.99 13 13 0.0016 0.3 12.7 1.2 1 23 504 526 504 526 0.97
Sequence Information
- Coding Sequence
- atggCTTTGCATGATCAGGGTCAACCAATGTGCCCTTTATGTAAAAGACAATTTCAGAGATTAGCTAGTTTAAAGTCACATTTGCTAATGCATCAAGTTGAAGAAACATTCATATGTAAGGAATGTTTGGCTGAATTTGAAAAGGagGATGAATATAATAGACATTTGGACAATCATAATTTAGTTAATCCATTTGATAATATACCATATATTTGTTcatattgcaattatttatttgaagatcCAAAGGATTATAAGGAGCATGTGTCTTATCATATTAAAATAAAAAAGTTGGTATTTAATCCTAAAAAAACACGTAAACGTACAACAAACAATAAGGAATATAGTCACAGATGCTCTGTGTGTGGTAAATCATTTCCTAAGAATTGTTTATTAGAACGACATATGAGAATACACaacggcgaaaaaccttttgcATGTACGAAATGCGATAAAGCTTTTTCACAGAAGAGCACTCTGCAAATACATTTAGTAAAACATTCAGGCCATAAGCCATATAAATGTACTTTATGCCCcgcagaatattttcaaaaagGTAATTTACGAGTTCATGTAGAAAAAACCCATACTGCTCCACCGAACATtgacaaaatgtataaatgtaccCAGTGTACTtgcatatttagaaaaattgcatCTCTTAATGCTCATATAACCAAAGCTCATGGAGGTTTAAAACATATTGGTGAACTTACTGAAGAAAAGGTGAAAATTCTTAAAAGATTATGTGAGGAATTTCCAAAGCCTCCCGAAAATACTGGTGAAGATAAATCAGCTAAAAGTTCTCAAGATATATTATCCATGGAAACAAATGAAACTTTTGTCAAATTAGCTGAAAATAGTGTAGATGGTACACTTCGAAGATATGTTGTTAAACAAAGAAGGATTGGAGATACCAAATTGTTTATTTGCTTGTATTGCAGTAAAGAATTCAAAAAGCCATCAGATCTTATAAGGCATATAAGAATACACACAAGAGAGAAACCATATaagTGTAAAACATGTAATCAAGGTTTTGCTTTGAAATCAACATTGTTATCACATTTAAACACTCATGATGGAAAAAGAGAATTTCAGTGTTTAATAtgctttaaatttttcacttcGGCTCGAACATTAAGTGTACATACAAGaaaacatAACAAATCAGGTACAACTACCagtttgaaatataaatgttcTACATGTAGTAAACTTTTTGGTACACTCGCTAAAGTTAGAAGTCATATGGATATTCACAATTGTAGTCATGATGATGTTGAGAAAAATGTGGTAGAGGAAGATTATGAAGTACAAGCTCCTTTGAAACAGCCGATGTTAGAAACTGAAAAAgGTTTGGTGACCGTACCCGCACCAAAGCCGCGTATACCACATGGAGAATTAGAGGAATATAAAAATAGACCTTATAGATGTCATATATGTAATGCAGCATTTCTGAGACCTACACATGTAAAGAGGCACATGTTAACCCATTCAggggaaaaaaattttaaatgtaatcttTGCTCTAAAGCGTTTCTGACACCTTATGGATTAAAAGAACATTCACGTTTCCATAATCCTGAAAAGAAGTTTGCTTGTACATTGTGTCCTCAAAAACTTTCATCCCTCTTGGATCCAGTTACTTTCGTCGGACGTCAGGTGAGGCATTTCTACCTGAATGTATTTTACCCACTCTTAAACGCAATGGTGCAAGCATCACGATTTGGGGACGAAGCATTTATGTGA
- Protein Sequence
- MALHDQGQPMCPLCKRQFQRLASLKSHLLMHQVEETFICKECLAEFEKEDEYNRHLDNHNLVNPFDNIPYICSYCNYLFEDPKDYKEHVSYHIKIKKLVFNPKKTRKRTTNNKEYSHRCSVCGKSFPKNCLLERHMRIHNGEKPFACTKCDKAFSQKSTLQIHLVKHSGHKPYKCTLCPAEYFQKGNLRVHVEKTHTAPPNIDKMYKCTQCTCIFRKIASLNAHITKAHGGLKHIGELTEEKVKILKRLCEEFPKPPENTGEDKSAKSSQDILSMETNETFVKLAENSVDGTLRRYVVKQRRIGDTKLFICLYCSKEFKKPSDLIRHIRIHTREKPYKCKTCNQGFALKSTLLSHLNTHDGKREFQCLICFKFFTSARTLSVHTRKHNKSGTTTSLKYKCSTCSKLFGTLAKVRSHMDIHNCSHDDVEKNVVEEDYEVQAPLKQPMLETEKGLVTVPAPKPRIPHGELEEYKNRPYRCHICNAAFLRPTHVKRHMLTHSGEKNFKCNLCSKAFLTPYGLKEHSRFHNPEKKFACTLCPQKLSSLLDPVTFVGRQVRHFYLNVFYPLLNAMVQASRFGDEAFM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -