Dalb026139.1
Basic Information
- Insect
- Dermolepida albohirtum
- Gene Symbol
- -
- Assembly
- GCA_031893035.1
- Location
- JAVIWB010004819.1:426234-469341[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.028 5 8.8 4.9 1 23 39 61 39 62 0.96 2 24 0.014 2.6 9.8 3.5 1 23 67 90 67 90 0.95 3 24 7.6 1.4e+03 1.2 0.0 6 23 103 121 101 121 0.83 4 24 6.4e-05 0.012 17.1 0.5 1 23 129 152 129 152 0.97 5 24 0.0011 0.21 13.2 3.3 1 23 158 181 158 181 0.95 6 24 2.1e-06 0.00038 21.8 1.0 2 23 187 209 186 209 0.97 7 24 0.0011 0.21 13.2 3.6 1 23 215 238 215 238 0.96 8 24 0.034 6.3 8.5 0.7 3 23 246 267 244 267 0.95 9 24 0.00038 0.069 14.7 0.5 1 23 275 298 275 298 0.93 10 24 0.015 2.7 9.7 0.3 1 23 306 329 306 329 0.95 11 24 1.6 3e+02 3.3 0.3 1 10 337 346 337 349 0.84 12 24 0.0064 1.2 10.8 1.6 3 23 412 433 410 433 0.93 13 24 0.016 2.9 9.6 0.9 2 23 443 465 442 465 0.95 14 24 0.00032 0.058 14.9 2.3 1 23 473 496 473 496 0.97 15 24 0.00046 0.084 14.4 2.6 1 23 504 527 504 527 0.97 16 24 0.071 13 7.5 0.8 1 23 533 556 533 556 0.91 17 24 0.004 0.73 11.5 1.9 3 23 564 585 562 585 0.93 18 24 0.00068 0.12 13.9 3.3 1 23 593 616 593 616 0.97 19 24 1.1e-05 0.002 19.5 0.5 1 23 624 647 624 647 0.97 20 24 7.8e-05 0.014 16.9 0.2 1 23 655 678 655 678 0.97 21 24 0.044 8.1 8.2 3.4 1 23 686 709 686 709 0.95 22 24 0.00072 0.13 13.8 0.4 1 23 717 740 717 740 0.94 23 24 0.0046 0.84 11.3 2.9 1 23 748 771 748 771 0.96 24 24 2.6 4.6e+02 2.6 0.4 1 11 777 787 777 793 0.78
Sequence Information
- Coding Sequence
- ATGGATTCGTTTGTTTCTAGGTGTTACGTTTTATCCCCTCTGGCTGATCAAACGGTAGAAGTTAAAAGCCATTCGTCCGTTTCAAATAAACACAGTAAACATCGATGTGAAGTATACAAATGCGGGCGATGCACATACAAAACAACATACAAAGTTGACTTTAAAGATCACATTAAACAACATCACGAAGTGAAAGCATACAAATGTCGGATTTGCCAAAAACGATTCCAATGGAAAAAGAATCTTAAACTGCACACGTTTAAGATTCATATTGGTACCGAAAGGAAAGAAAATCAAGGTTTGATGTGTAAATATGAAGCGAATGAAAATTGGGATTTGAAGAATCATATAAATGCTGAACACTTTGGAGAGAAAGTGCGAAGATTTAAATGTCCCGAATGTGAATATAGGACAAACAGTAAATGGTATTTGAATGTTCATATAAGAGCAAGACATTGTGAAGGAAAATCGCATAAATGTGCAGAATGTGATTACGAAACAAACTACAAGTGGCATTTAAAAAGAcatataaatgcaaaacattgtgaagaaaatattaaatgtccgGAATGCGATCACAAGGCGACCACGAACTCAAATTTAGAGAGGCATTTAAGAACAATACATTGTGAAAAAATGCCGTATAAATGTCCAGAATGTGATCATAAGACACACaaaaaatcacttttgaaaATACACATAGATTCCCAACATTGCGACGTGAAACAATTCGGATGTTCAGAGTGTGAATTTACAACGACGTATAAATTAAGTCTGAGAAAACATGTGATTGTAAAACATAGCGAAGAGACTGTTAAGCACTTTAAATGTGAGGAATGTGATTACGAAACAAACGACAAATGGTATTTGAAACGGCATGCAGATATAAAACATTGCGAAGGACAATTAAAACGATATGAATGTCTAGAATGTGAATACCAAACAGCAAGAGTATGGTATTTGAAAAGGCATATAAGTGAAAAACATTGTGAAGAGCAATTGAGACAATATAAGTGTCCAGAATGTGAATATCGAACAGCTACTGTGTGGTATTGCGTTTTACCCGCACTGGCTGATCAAATGGCAGAAGCTAAAAGATATTCAGCTGTTTCAAATAGACACAATAAACATCGACGTAAACCATACAGATGTTCACAGTGTATCTACAAAACAATATACAGGTGTGACTTTAAAGATCACACGAACAAGCATTATGAAGTGAAAACGTTCGGATGCGGAATTTGCCATAAACGAttcaaatggaaaaagaatCTTAAATTGCACGTAATCAATGTCCATATTGATACCGAAAAGAGGAAGATTCAGCAATGTTTTATGTGCAAATACGAAACTAAAAATAGATTGGATTTGAAAAATCACATCAATGCTGAACATCCTGGAGAGAAGGTGAGAAGATTTCAATGTGCCGAATGTGGATACAGAACAAACAGTAAATGCTATTTGAAAGTtcatataaacataaaacattCTAAAGTAAAGGCAACACCATTTAAGTGTTCgaaatgtgaatacaagacgagcacgaaattaaatttaagtaggCATGTAAAAGTAACACATTGTGAACAAAAACCGTACGATTGTCCTGATTGTGAATACAATACACACGCGAAATCACTTTTGAAAATACACAGAGACGGCAAACATAGCAATGTGAAGCAATTTGGATGTACGGAGTGTAAATTTACGACGACATACAAATCAAGTCTGAAAAAGCATGCGACTATAAAACATATAGGAAAGACTGGTAATCGTTTTAAATGCTCTGAATGTGATTACGAAACATTTTACAATTGGCATTTGAAGAGACATATAGATACTAAACATGCTAAAGATAGTGGAAAACAATTTGAATGTCCGGattgtgattacaaaacaaacgaCAAATGGTCTTTGAAACGACATGCAAATACACAGCATTGTGGAGAAAAATTGAAGCGATTTAAATGTCCAGAATGTGAGTATCGAGCAGCAAGCGCATCTAATCTGAAAACCCATGTAAATGTAAAACACTGTCAAGAGAAAGTAGAGCGATTTAGATGTTCAAAATGCGAGTACAAAACGAACTGCAAAGCGAACTTGGAAAGACACATAAATGCGAAACATTCCAAAGAAAAAGTCAAACGATTTGAATGTTCGGAGTGCGAGTTCAAAACGACCTCGAAAGCAAATTTGGAAAGCCATGTAAATGCAAGGCATCGTCAAGAAGCATCAAAGCGATTTAAATGCCGGGAATGTCATTTCCAAACAAACTACCAAGGAAATTTGAAGGAACATATAAACGCAAAACACCGTGAAGAGAAGCGATTTAAATGTCCGGAATGTAGAACATCTCGTCGTGTACCTACATATTTCGAACTTATATTATCTCATGATGAAACTTACACTCCTAATCTAAAGCAAATATCTGGACTTTTAAGATCATTAGGTGGAGGTGCTGTGAGCGACAGCAGGTCAATGCTGCTAAAGCAGAAAGATATCAATTAG
- Protein Sequence
- MDSFVSRCYVLSPLADQTVEVKSHSSVSNKHSKHRCEVYKCGRCTYKTTYKVDFKDHIKQHHEVKAYKCRICQKRFQWKKNLKLHTFKIHIGTERKENQGLMCKYEANENWDLKNHINAEHFGEKVRRFKCPECEYRTNSKWYLNVHIRARHCEGKSHKCAECDYETNYKWHLKRHINAKHCEENIKCPECDHKATTNSNLERHLRTIHCEKMPYKCPECDHKTHKKSLLKIHIDSQHCDVKQFGCSECEFTTTYKLSLRKHVIVKHSEETVKHFKCEECDYETNDKWYLKRHADIKHCEGQLKRYECLECEYQTARVWYLKRHISEKHCEEQLRQYKCPECEYRTATVWYCVLPALADQMAEAKRYSAVSNRHNKHRRKPYRCSQCIYKTIYRCDFKDHTNKHYEVKTFGCGICHKRFKWKKNLKLHVINVHIDTEKRKIQQCFMCKYETKNRLDLKNHINAEHPGEKVRRFQCAECGYRTNSKCYLKVHINIKHSKVKATPFKCSKCEYKTSTKLNLSRHVKVTHCEQKPYDCPDCEYNTHAKSLLKIHRDGKHSNVKQFGCTECKFTTTYKSSLKKHATIKHIGKTGNRFKCSECDYETFYNWHLKRHIDTKHAKDSGKQFECPDCDYKTNDKWSLKRHANTQHCGEKLKRFKCPECEYRAASASNLKTHVNVKHCQEKVERFRCSKCEYKTNCKANLERHINAKHSKEKVKRFECSECEFKTTSKANLESHVNARHRQEASKRFKCRECHFQTNYQGNLKEHINAKHREEKRFKCPECRTSRRVPTYFELILSHDETYTPNLKQISGLLRSLGGGAVSDSRSMLLKQKDIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -