Dalb008187.1
Basic Information
- Insect
- Dermolepida albohirtum
- Gene Symbol
- -
- Assembly
- GCA_031893035.1
- Location
- JAVIWB010001573.1:120150-145797[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1e-05 0.0019 19.6 0.1 1 23 748 770 748 770 0.98 2 12 0.0023 0.42 12.2 0.5 1 23 776 798 776 798 0.96 3 12 1.2e-05 0.0021 19.4 3.2 1 23 804 826 804 826 0.98 4 12 4.6e-05 0.0084 17.6 0.4 1 23 838 860 838 860 0.96 5 12 0.00022 0.041 15.4 0.3 2 23 867 888 866 888 0.97 6 12 2.1e-06 0.00037 21.8 3.9 1 23 894 916 894 916 0.97 7 12 4.5e-06 0.00081 20.8 0.1 1 23 922 944 922 944 0.96 8 12 3e-06 0.00054 21.3 0.0 1 23 950 972 950 972 0.99 9 12 1.2e-06 0.00022 22.6 1.6 1 23 978 1000 978 1000 0.98 10 12 6.1e-06 0.0011 20.3 3.2 1 23 1006 1028 1006 1028 0.98 11 12 5.6e-06 0.001 20.5 0.3 3 23 1036 1056 1035 1056 0.98 12 12 5e-06 0.00091 20.6 0.9 1 23 1062 1084 1062 1084 0.99
Sequence Information
- Coding Sequence
- ATGGATATGAGTATCTACTTAACTGCCCCTCTTCAATTAGATAAGATCTGCAGAGCTTGTTTAACAGAAAAGGGTGATATGAGACCCTTATTTGGAGCTTGCCTAGATGAAATGTTGATATCTTTTGCTGACTTACAGatTCGGGAGGGCGATGGTTTGCCAAGCCTTATGTGTGTACAATGCGTTCTGCAATGTAGTAGAGCTTATACATTTAAACAGCAATGTGAAAAGTCCGAAAATATTTTACGGCAATACATGACTCCTGAATTTcagAGCGTAATAGAAAAAAGaaaaaggaCAACAACTAAAGCAGAATGGGCCCCAGAAGCAATGAGGGCTGCCATAGAAGCTGTGAGATCCGGAAGAAAAATTAGGGAAGTGTCACGCGTTTTTAAAGTTCCATTTAGTTCCCTCCGAGATagattgaaaaagaattattatgaccCGCGACTAAGAAGAAAATCTACATTTTCTGCAGAAGAAGAACGTTTGATTCGGAGTCATgtcttaaaattatcaaatcaaTTTTACGGACTTACAGCACATGAACTCAGAAAGATTGCGTTTCAATTTGCGAAagcaaataacataaaaaatatgtttaatgaagCTACTCAATTAGCCGGTAAAGATTGGCTTCAGAGATTTTTAAACAGAAATCCACAGATTAGCATTAGAAAGCCAGAGGCAACTAGTCTCAACAGGGTTAAAGCTTTTTCTAAAGAGAACGTAGCAACTTTCTTTCGAAATTTGGAAGCTGTGATGGAGCGTTACAAATTTGATCCTTCATCTATTTATAATATGGACGAGACAGGGATTAGTACAGTTCATAAGCCAAATAGAATTCTAGCGCCTATAGGTCAAAAACAGGTAGGAATAGTAACAAGTGGAGAACGCGGCCAAACCACCACCGTTTGTTGTGCCTTTAGCGCATCTGGAGCTTTTATTCCTCCTATGTTTATATTCGCACGGCAAAGAATGAGTACGCAGCTACAGAAAAATGGACCTCCAGGATCAATATTCAAATGCTCAAAATCAGGTTGGATCACCGAGGAATTGTTTTATGAGTGGTTAAAACATTTTACGAAGCACTCAAAAGCTACAAAGGACAATCCCGTTTTTTTGATTGCTGATAACCATACCAGTCATATTTCTCTCAATTGCTACAATTTCTGCCGAGAAAATGGaatagtttttctttctatCCCTCCACACACTTCGCACCGGCTACAGCCTTTAGACATTTGTTTTTACAGTCCTTTAAAAAAGGCTTACTATCGTGAATGCGAGTTATTTATGAAGTCACatccctttgaaaaaataacaaattatgacATTGCAGAATTGTTTAACAAGGCCTACGGAAGGGTTGCGTCAGTTGAAAAGGGGATTAGAGGATTTAGTTCCGCCGGGATATATCCTTTAAACCCCACCATATTCGATGACGATGTGATTGAACTGGAAAATGATCAAAATTCGGAACCCACAGCGAATATTGTTCAACCTTCCACTAGTAAAGTGTTAACATTTTCTCATTTTGTGTCAACTTCAACACTAACAAAGGGTTCtactattaatgaaaaatcttCTAATGCTAAAAATAGCGGCAAAGCTGCCACTGTTTCTGCAACCAATTCCAAGCCAAATAAAAGACAGGCTAGAAAAAAACAAAGTTCTGAAATAAATACGTCAACACCAATGAAAGATATTTTGgaagaaagacaaaagaaaaaggaagaaaagctggaaaaattgaatattagcaAGGTGAAAGAGGAAAGAGTGCGCAAAGtaacgaaaaaaattagatttgtcGAAAGTTCTAGTGAAAATTCGGATGTTATCATGACTGGAATTACTGATGACAACGAACCTGATGACATAGGAGACATGCAAGacacagaaaataatGAGCAACTATCTCAACATTTAGCAAATCAAACAAAGGTTGAGTTGCAAGAACAACTACAATTTCCGGCCAGTATTGAACGCGTAATAGTTGACCAATTGCCTACAGAATTTGTTAGTGTAGAATATGGGGACCAGAATATTTCAATTgttAAAGATGAATTTGTTCTAATCAACGAAGTGACGGGAGAAATTGTTGCGCAAGTGGAAAATCAAGAAAAGAGTGATAAATGTGTGGATGAAGCGCCGGAAGAGCACATGACACAAGCACCACCGCCGTCACCACCACCACCACCTCCACCAGcaacagaagaagaaaaaaaacctttaaagTATCCATGTCCTAACTGTAATGAATCATTCGCCCTAAAAGtagatttaaaaATTCACTTAATGACACATCCAAAAGAACTTGAGCACATCTGTAATGTATGTCAGAAAGCTTTCCCCGAAGCTCGTATTTTAAAACGTCATTTGAAAATCCATCTTGATAAAAAACCTCATCAATGCGATCAATGTGACATGTCATTTGCAGAAAGTTCAAATCTCACCAAGCACAAGAAGAAACATACAGGAGAGTTAAGAAATGTTAAAGGAAAACCATATCTGTGTTCAGTTTGTGGTAGAGCTTTTAAATGGCCATCAAGTCTTTCAAAACATATGAAATATCATACCGGTCATAAGTTATTATCATGTGaatattgcagtaaacaatatgtcgagGCAAGAAGTTTACGAATACACATTCGCTCGCATACTGGAGAACGACCACATGTATGTGATATATGTCAGAAAAGTTTTACTCAGCTATGTAATTTGGAAAAGCATCTACGAGTTCATACAGGCGAAAAACCGTTTCTTTGTCCCATATGTGGAAAAGGatttacacAATCGGGTTATGTTGGTATTCACATGAGAACACATACAGGTGAGAGGCCCTATGTTTGTCCTACGTGCGGAAAAGCCTTTGCTGGATCGAATACTCTTGCGATACATCAAAGAATTCACACTGGGGAAAAGCCTTATCCTTGTACTCTGTGTGGAAAATCTTTTAGTCGACATGAAACGCTTGTGATCCATACTAGATCTCATACCGGTCATAAACCGCACGTTTGTTCGGTATGTAAAAAAGGATTCACATCCTCTGGACATCTCTCGGGACATATGAGAACACACACAGGTGAAAAACCACATGGCTGTACATTATGTGATAAAAgATTTGCTGGATCAAGTAGTTTAAAAGCTCACATGCGTGGTCATATAGGCGAAAAGccatataaatgtaaattgtgCAATAAGCCATTTGCTCAGATAACAACATTACAGCAGCATATGCTGTCACATTCAGCAGTAACTAAATCTCCAAAGGTGCCTAAAGTCGAAGCTGTGCAAGTCGCCGAATTCACTGTTCTTCAAACGATAACTTCGATGTAA
- Protein Sequence
- MDMSIYLTAPLQLDKICRACLTEKGDMRPLFGACLDEMLISFADLQIREGDGLPSLMCVQCVLQCSRAYTFKQQCEKSENILRQYMTPEFQSVIEKRKRTTTKAEWAPEAMRAAIEAVRSGRKIREVSRVFKVPFSSLRDRLKKNYYDPRLRRKSTFSAEEERLIRSHVLKLSNQFYGLTAHELRKIAFQFAKANNIKNMFNEATQLAGKDWLQRFLNRNPQISIRKPEATSLNRVKAFSKENVATFFRNLEAVMERYKFDPSSIYNMDETGISTVHKPNRILAPIGQKQVGIVTSGERGQTTTVCCAFSASGAFIPPMFIFARQRMSTQLQKNGPPGSIFKCSKSGWITEELFYEWLKHFTKHSKATKDNPVFLIADNHTSHISLNCYNFCRENGIVFLSIPPHTSHRLQPLDICFYSPLKKAYYRECELFMKSHPFEKITNYDIAELFNKAYGRVASVEKGIRGFSSAGIYPLNPTIFDDDVIELENDQNSEPTANIVQPSTSKVLTFSHFVSTSTLTKGSTINEKSSNAKNSGKAATVSATNSKPNKRQARKKQSSEINTSTPMKDILEERQKKKEEKLEKLNISKVKEERVRKVTKKIRFVESSSENSDVIMTGITDDNEPDDIGDMQDTENNEQLSQHLANQTKVELQEQLQFPASIERVIVDQLPTEFVSVEYGDQNISIVKDEFVLINEVTGEIVAQVENQEKSDKCVDEAPEEHMTQAPPPSPPPPPPPATEEEKKPLKYPCPNCNESFALKVDLKIHLMTHPKELEHICNVCQKAFPEARILKRHLKIHLDKKPHQCDQCDMSFAESSNLTKHKKKHTGELRNVKGKPYLCSVCGRAFKWPSSLSKHMKYHTGHKLLSCEYCSKQYVEARSLRIHIRSHTGERPHVCDICQKSFTQLCNLEKHLRVHTGEKPFLCPICGKGFTQSGYVGIHMRTHTGERPYVCPTCGKAFAGSNTLAIHQRIHTGEKPYPCTLCGKSFSRHETLVIHTRSHTGHKPHVCSVCKKGFTSSGHLSGHMRTHTGEKPHGCTLCDKRFAGSSSLKAHMRGHIGEKPYKCKLCNKPFAQITTLQQHMLSHSAVTKSPKVPKVEAVQVAEFTVLQTITSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -