Dalb015860.1
Basic Information
- Insect
- Dermolepida albohirtum
- Gene Symbol
- znf711
- Assembly
- GCA_031893035.1
- Location
- JAVIWB010002904.1:48498-54516[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0002 0.037 15.5 4.7 1 23 171 194 171 194 0.97 2 16 1.1e-05 0.002 19.6 0.2 1 23 200 222 200 222 0.98 3 16 0.00011 0.021 16.3 2.6 1 23 228 250 228 250 0.96 4 16 8.5e-06 0.0015 19.9 1.2 1 19 256 274 256 276 0.97 5 16 8.3e-05 0.015 16.8 1.0 1 23 287 309 287 309 0.98 6 16 0.00045 0.081 14.5 3.1 1 23 315 337 315 337 0.97 7 16 0.00078 0.14 13.7 3.6 1 23 343 366 343 366 0.96 8 16 4.6e-06 0.00084 20.7 2.2 1 23 380 402 380 402 0.98 9 16 1.5e-05 0.0026 19.2 1.4 1 23 408 431 408 431 0.97 10 16 0.00016 0.028 15.9 4.1 1 23 440 462 440 462 0.96 11 16 0.00013 0.024 16.1 2.9 1 19 468 486 468 491 0.90 12 16 0.011 1.9 10.1 2.3 1 23 499 521 499 521 0.96 13 16 3e-06 0.00055 21.3 3.2 1 23 527 549 527 549 0.98 14 16 0.0014 0.26 12.9 3.3 1 23 554 577 554 577 0.96 15 16 1.1e-06 0.0002 22.7 1.9 1 23 591 613 591 613 0.97 16 16 6.6e-06 0.0012 20.2 4.5 1 23 619 641 619 641 0.99
Sequence Information
- Coding Sequence
- ATGTCATTTCATGAAGGAATATGttgtatttgtttagaaaaccaTGATCAATTAAAACACACGGAAGAAAATGCAGAAGACAACGTAAAATACACCGCAAAACTATCTGCCTGTATTCCAGAGCTGgATTGGAGCAAAGGCTATTTCCTGTGCGAAAACTGTACGGAAAAAGTGAACATAATATATGATTTTAGAAACCAATGCCTTAGatcttttgaaataataaaaaccgaAACGAGTGGAGTTAAATATGGAAGTTGTAGTAATGAGAAACTGAATAATTTCTGTGAAGAAACCAGTATTAGTAATGCAAAGAGAAATGAAGAGAATTTAACAGAAATTCAAACTAGCTCATATGAAATTGAAGCACATAAGGTAAATTGCGATGTTCCTTATGTAAAAAATGTAGAAAGCAGTGATGATGAATTACGGGATGATCTCCGTGATAATCAAGAAGAAATATCAAAACCTAAAGTAAAACGTGGCAGGAAACCACTGGAAAAGCAGGTACATCAATGTTATATCTGCAATCATTTATTTTCGACAAAATATCTCTTAAGTAGGCATATAAGAAATGTACACGCTACAGAAAAACTATACAACTGTGATATTTGCGGCCAGAAATTCGCCAGTCCTGTATATTTATCTGCTCATAAACGATATCATTCAGGTGAACGACCCCATATATGTTCAACCTGTGGAAAAGGATTTATAACGACGAGCGATCTGTATCATCACGAAAAAATCCACGCGAACAAAAGATCTTATAAATGCGAAAAATGCCCGAAAGCCTTCAACACATCATCAGACCTTCACAAACACAATATATGCGTGCATTTAGACAGGAGTGAATGGAAATATGTGTGTTCATTTTGCAATAAACGGTTCCCACTTAAAACCAATCTAGACACCCATGTTAAAATTCACACCGGTGAGAAGAATTTCGCGTGTCACATGTGCGAAAGACGTTGTATTAATAAATCAGTATTGCTGAGACACATAGAAACGCATTCTAACGTCCGTTCGTTCCGTTGCCACGTGTGCAAGCAGGAATACAAGTATCAAAAGACACTGAACATCCATCTGACGAAAGCGCACGGTATCGGCGACGCAAAAGTACCCGAAAGAACCAAGAAGTACATCTGTCATATATGTCCTAAGTCTTACTACGCCAACAACAAGTTACAGAAACATATACGAACTCATACGGGAGAACGTCCGTTTGTGTGTAACGTTTGTGAAAGGAAATTCATCGACAAACCCTGTCTAAATCAACATATGAAATCGGCGCATAGTATTTTGTTTgGTACAAGACCCCATATTTGCTCAACTTGTGGAAAAGGATTTATCACAGTGTCCAACCTCCACCATCACGAAAAAATTCACGCGAACAAAAGATCGTACAAATGCGATAAATGCCCGAAAGCCTTCAACAATTCAAACTATCTTCGTCAACACTGTATACGCATCCACTTGGACAGTAGCGAATGGAAACACGCCTGTTTCCACTGCAATAAACGCTTTCCCCTTAAATCCATCTTAGATGCCCACATCAAAGTTCATACCGGGGAGAAGAACTTCGTCTGTTACGTGTGCGGCAGACGCTGCACTAGGAAAACGGCATTACGAAAACACATGGAAACGCATTCGACGCGTTCGTTCCGTTGCCACGTGTGCAAAAAGGAGTACAAGAAACGAAATTCCCTGGACATTCACCTGACGAAAGCTCACGGTATCGGCGACGCGAAAGTTCccgaaagaaaaaagaatttcgccTGTCATATGTGCCCTAAAACTTATTCCGACAGTCCAAAGTTGCAAAGACATTTAAGAAGTCACACGGGCGAACGTCCATTTAAGTGTGGTGTTTGTGAGAAGAAATTCACCGATAAATTCTGCTTGAAAAAGCATATTAAAGTACATCGTATTTTGAACGACGTTCCGTGTAATAAAGATGTTAGATCGAAGTAA
- Protein Sequence
- MSFHEGICCICLENHDQLKHTEENAEDNVKYTAKLSACIPELDWSKGYFLCENCTEKVNIIYDFRNQCLRSFEIIKTETSGVKYGSCSNEKLNNFCEETSISNAKRNEENLTEIQTSSYEIEAHKVNCDVPYVKNVESSDDELRDDLRDNQEEISKPKVKRGRKPLEKQVHQCYICNHLFSTKYLLSRHIRNVHATEKLYNCDICGQKFASPVYLSAHKRYHSGERPHICSTCGKGFITTSDLYHHEKIHANKRSYKCEKCPKAFNTSSDLHKHNICVHLDRSEWKYVCSFCNKRFPLKTNLDTHVKIHTGEKNFACHMCERRCINKSVLLRHIETHSNVRSFRCHVCKQEYKYQKTLNIHLTKAHGIGDAKVPERTKKYICHICPKSYYANNKLQKHIRTHTGERPFVCNVCERKFIDKPCLNQHMKSAHSILFGTRPHICSTCGKGFITVSNLHHHEKIHANKRSYKCDKCPKAFNNSNYLRQHCIRIHLDSSEWKHACFHCNKRFPLKSILDAHIKVHTGEKNFVCYVCGRRCTRKTALRKHMETHSTRSFRCHVCKKEYKKRNSLDIHLTKAHGIGDAKVPERKKNFACHMCPKTYSDSPKLQRHLRSHTGERPFKCGVCEKKFTDKFCLKKHIKVHRILNDVPCNKDVRSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -