Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0012 4.1 8.6 0.9 8 29 4 24 1 30 0.78

2 7 0.029 1e+02 4.1 1.8 6 30 32 55 26 65 0.69

3 7 3.4e-06 0.012 16.7 6.4 17 43 75 98 70 99 0.92

4 7 0.0043 15 6.8 0.2 6 28 98 119 97 130 0.81

5 7 0.018 65 4.7 0.2 18 29 137 148 122 159 0.84

6 7 0.012 43 5.3 0.4 15 29 162 176 149 187 0.79

7 7 0.061 2.1e+02 3.1 0.5 18 28 193 203 180 214 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0012	4.1	8.6	0.9	8	29	4	24	1	30	0.78
2	7	0.029	1e+02	4.1	1.8	6	30	32	55	26	65	0.69
3	7	3.4e-06	0.012	16.7	6.4	17	43	75	98	70	99	0.92
4	7	0.0043	15	6.8	0.2	6	28	98	119	97	130	0.81
5	7	0.018	65	4.7	0.2	18	29	137	148	122	159	0.84
6	7	0.012	43	5.3	0.4	15	29	162	176	149	187	0.79
7	7	0.061	2.1e+02	3.1	0.5	18	28	193	203	180	214	0.82

Coding Sequence: ATGCATATACGTGCTCACGAAGGTAGTACAAAATACAAATGTGAAATTTGCAATAAAGCATTTGCCGTTAGTACCCATGCTGCTGagcataaatattttcacacTGGTGAAAAGCCTTTTCAATGTGAAATATGTGGCAaacattttatgttttcttggTTTTTAACTTCTCATCGTAGATCTCAACATTGGGAAATCATGACTGGAATGCCCTTAGTTAAATACgattgtaatatttgtaataaacattATACATCATCAACGGGTTTGAAACGTCATATACACAGTAAACATTTTGAATCTTCCGGCCGTGAGTTTGCTGTGTTGTGTGATATTTGTGGAAAAAGACTTGCAAGTATGGAAAAGTTGAAGTTTCATAATCGCATTCATACAGGCTATAAGCCATTTTCGTGCGCTTTTTGTGCAAAATCGTTTTCTCGcaaagaacaattaaaagaaCACGAACGAGTGCATACTGGTGAAAAgccatacatatgtaaattttgtGGTAAAGGATTTACTCAGAGAAGTCCCTTAAGGATTCATGAAAGGACACATACAGGCGAACGTCCTTATTCTTGTAGGCTGTGCGGTAAAGGCTTTATTTCCAAGGGCGTAATGGATACACACATGAAAAATTGTCGAGGACAATGA
Protein Sequence: MHIRAHEGSTKYKCEICNKAFAVSTHAAEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRSQHWEIMTGMPLVKYDCNICNKHYTSSTGLKRHIHSKHFESSGREFAVLCDICGKRLASMEKLKFHNRIHTGYKPFSCAFCAKSFSRKEQLKEHERVHTGEKPYICKFCGKGFTQRSPLRIHERTHTGERPYSCRLCGKGFISKGVMDTHMKNCRGQ

Sequence clustering based on sequence similarity using MMseqs2