Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.1e-13 9.2e-11 42.4 0.0 2 40 18 56 17 59 0.91

2 3 9.4e-07 0.00081 20.1 0.0 20 40 107 127 106 130 0.90

3 3 6.6 5.7e+03 -1.8 0.0 12 22 209 220 208 221 0.73

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.1e-13	9.2e-11	42.4	2	40	18	56	17	59	0.91
2	3	9.4e-07	0.00081	20.1	20	40	107	127	106	130	0.90
3	3	6.6	5.7e+03	-1.8	12	22	209	220	208	221	0.73

Coding Sequence: ATGCCTAGATTTTATAAGAGAAAATCTGATAGTACACGTCAAAAATGGGATCCTCAAAGCATGAAGGAGGCAGTACAAGAAGTAAGATGTCAAAAAATGAGTATTCGCGAAGCTGCGAGAAATTTTGATGTCCCTCGCAATACTCTTAGCAGACATGTGAAGTCGAATGAGCCAGAGATTCGTACTGCTTTGGGACCTAGTGgTTGCCTTGGggaagaaaacgaaaacaagCTTGCATCGCACTTGAAAAATATGAGTAGAGCAGGATTTCCACTGAATTCGATGAAAGTACGTCAACTGGCTTTTGAGTTTGCTGAACGCGAAGCTGCGAGAAATTTTGATGTCCCTCGCAATACTCTTAGCAGACATGTGAAGTCGAATGAGCCAGAGATTCGTACTGCTTTGGGACCTAGTGgTTGCCTTGGggaagaaaacgaaaacaagCTTGCATCGCACTTGAAAAATATGAGTAGAGCAGGATTTCCACTGAATTCGATGAAAGTACGTCAACTGGCTTTTGAGTTTGCTGAACATTTGAAAATtccgaataaatttaatacagaaAAACGGCTTGCTGGGTATGATTGGTTTCTTTTGTTTATGAGACGTCATCACGATTTATCTATTCGGAAATCAGAAGGGTTGTCGGTCGCCAGAGCAAAAGGACTGTCAAGGAAAACTGTTCAAGAATTTTATGACTTGCTGGACGCAGAAGTTAAGGAATATGGCCTCGAAAACAAGCCACATAACATATCTAACTGCGATGAATCAGGAATTCAGCTTATAAATAGCACTGAGAAAGTTATTGCAGCCAAAGGATCCAAAGCGGTCTATCAAGTGACAACAGGAGAAAAAGGGGAAACTGCCACTTTGCTTGCTTGCTGCTCTGCTGAAGGGCAATATTGA
Protein Sequence: MPRFYKRKSDSTRQKWDPQSMKEAVQEVRCQKMSIREAARNFDVPRNTLSRHVKSNEPEIRTALGPSGCLGEENENKLASHLKNMSRAGFPLNSMKVRQLAFEFAEREAARNFDVPRNTLSRHVKSNEPEIRTALGPSGCLGEENENKLASHLKNMSRAGFPLNSMKVRQLAFEFAEHLKIPNKFNTEKRLAGYDWFLLFMRRHHDLSIRKSEGLSVARAKGLSRKTVQEFYDLLDAEVKEYGLENKPHNISNCDESGIQLINSTEKVIAAKGSKAVYQVTTGEKGETATLLACCSAEGQY

Sequence clustering based on sequence similarity using MMseqs2