Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00081 0.053 14.4 0.1 1 23 74 97 74 97 0.94

2 7 0.0017 0.11 13.3 0.1 2 23 123 145 122 145 0.93

3 7 0.029 1.9 9.5 0.4 2 23 168 189 167 189 0.97

4 7 0.00031 0.02 15.7 0.1 1 23 193 215 193 215 0.98

5 7 0.00052 0.034 15.0 0.6 1 23 220 243 220 243 0.96

6 7 0.0048 0.31 11.9 0.8 2 23 251 273 250 273 0.91

7 7 0.017 1.1 10.2 7.3 2 23 281 303 280 303 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00081	0.053	14.4	0.1	1	23	74	97	74	97	0.94
2	7	0.0017	0.11	13.3	0.1	2	23	123	145	122	145	0.93
3	7	0.029	1.9	9.5	0.4	2	23	168	189	167	189	0.97
4	7	0.00031	0.02	15.7	0.1	1	23	193	215	193	215	0.98
5	7	0.00052	0.034	15.0	0.6	1	23	220	243	220	243	0.96
6	7	0.0048	0.31	11.9	0.8	2	23	251	273	250	273	0.91
7	7	0.017	1.1	10.2	7.3	2	23	281	303	280	303	0.96

Coding Sequence: ATGCACGTATTAACACTGAAAAGAAGGAATCGAAAACCAGAAAAGAAAAGATACGTACCGGTAAAGAGGAAGCACATCATAAGAATCGAGAGGAACGCAGAGCCAAGTAACGCTATCATGATGATCAAGAAGAATCCTAAATggaaaaatttagaaaatttacTAACCGTTCTTAAACATTCCAACGCAACACCAATCAAGAAATATGGCGGTATAGGTTACACATGCAGTTATTGTGATATTCAATACACAGAAGCCGCTGCGTTAAAAGAACATACATTAGAAGCACACAAAAATGGTAATGAGGAAGTTTTTCTTAACAGCAAAAAACCTTTTACCCACGTAAAGTTGGATGTTACAGATTTGACATGTTCCATTTGTCAAAAAGGTTTTGTCGATCTACAATTGTTTATAGAACATCTAGTGATGGACCATCAAAAGAACTTTTATAGGGACGTACCACCTCACATGATTCCTTTTAAATTCGATTCATCGTTACTCAAATGTCTCTTATGTAAAGTCGAATATGGAACATTTAAAATGTTGCTTGTACACATGAATTCACATTTCGAGAATTTCGTCTGCGATGTCTGCGGTAAAGGATTTATAGCTAAGTCTATTTTGCAAACGCATCTGATTCGACACAGGACCGGTGTTTTTAAATGTGCCATCTGCGACAAAAACTTTAATACGCTTGTGAAACAAAAAGAGCATACTAGAGCTGTTCACATCTTGCACAATAAAAGGAGTAGATGTGGGTATTGTGGTGAAAAGTTTAGCGATTACACGCAGAAGAACGATCATGTCGTCAAAAAACATGGCGGAAAGCTATTAGTTTTGCAATGTCACGCGTGTGAAAAGACATATGATAATCAAAGGTCTATGAATCACCATATCAAAAAGTGCCATAGCATTGAAAGACGCAAAGCACAATAA
Protein Sequence: MHVLTLKRRNRKPEKKRYVPVKRKHIIRIERNAEPSNAIMMIKKNPKWKNLENLLTVLKHSNATPIKKYGGIGYTCSYCDIQYTEAAALKEHTLEAHKNGNEEVFLNSKKPFTHVKLDVTDLTCSICQKGFVDLQLFIEHLVMDHQKNFYRDVPPHMIPFKFDSSLLKCLLCKVEYGTFKMLLVHMNSHFENFVCDVCGKGFIAKSILQTHLIRHRTGVFKCAICDKNFNTLVKQKEHTRAVHILHNKRSRCGYCGEKFSDYTQKNDHVVKKHGGKLLVLQCHACEKTYDNQRSMNHHIKKCHSIERRKAQ

Sequence clustering based on sequence similarity using MMseqs2