Dpun016518.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022554.1:3366390-3407249[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.55 36 5.4 1.5 2 19 461 478 460 482 0.87 2 14 0.00074 0.049 14.5 0.1 1 23 492 515 492 515 0.97 3 14 0.019 1.2 10.1 1.0 2 21 605 624 605 625 0.92 4 14 0.038 2.5 9.1 3.8 2 23 684 705 683 705 0.95 5 14 0.00014 0.0089 16.8 0.2 2 23 747 770 746 770 0.95 6 14 0.074 4.8 8.2 0.2 1 23 776 798 776 798 0.93 7 14 0.0041 0.27 12.1 3.2 1 23 804 826 804 826 0.98 8 14 0.41 27 5.9 0.2 2 19 837 854 836 857 0.89 9 14 0.37 24 6.0 0.2 1 23 936 958 936 958 0.97 10 14 2.2 1.4e+02 3.6 7.2 1 23 965 987 965 987 0.95 11 14 0.0015 0.096 13.6 1.8 1 23 1024 1047 1024 1047 0.95 12 14 0.0034 0.22 12.4 1.9 1 23 1054 1077 1054 1077 0.97 13 14 0.00083 0.055 14.3 0.3 2 23 1099 1121 1098 1121 0.96 14 14 0.00044 0.029 15.2 0.7 3 23 1169 1190 1167 1190 0.95
Sequence Information
- Coding Sequence
- ATGGAAATGGAAGAGTTTCAGCCTACACCCCTGATACTTTGCATGGAGAATGCTCTTGGTGAAGAGGTTTCACTACAAATTGAACCTCATGATGATTTCCAAACATTTTTGGAGAAGGCCAAATTACTTCTGGGCTTTGATGTAGACATAAACTCCATAACTCATAATGAACCAGTGTCATTAACTGACAATATATACGATTATCTAATGAATTCTGAGTATAACCAACACGGTTTATCATTAGACGCTCCCAGAAATCCTCAAGATGACCAACTATACATACTAAATGACGGTACTCAAATATGCGCTTCTCAAATACACTTTGACAATGATGACCCTCCAATAGATTTGACTGCAGAAAAGATACCTTTCGTCAAATACGCTGATGATTCTTTAGGTGATGATGAAGGTGATAATATCCATCAAGATGTGAATATAGtcaagtataatattgttaaaagcCCAATTCGATGGTCTAAAAGTCCTAAAAACTTCATCAAGAGCCTACCTTTTAAACTTGTTTGTAATAATACAACAAGCTTCGAACATCAGTTTACGAAATATTTAGAATCTCAAAACAAGACTTACGCCACACTTAATACTGTGTTAAATGCTAATAAATCTCCAAACACTTTGATCAAAGATAACTTTAAGAAATTTGATGATTATAAAGAAGTGTGCTACACTAGAgaggatattttaaatatgtttaaagattCACCAGTGAATTCTTTGCCTTTTGAATATACAGAAAGAAAACACGTGAGGAAAACAGATCCGTCGCGTATTCACAAATGTTTGAAGCCGAAAATGCCTTATATTGATACAAATGGGGTTATTATAGGTGGATTTGAGAATCAGCCTTGCTACATTTGCGGCAAAAACGTAGACTATACAGAGAAGCTATATCTATTTGACAACAAAGACCAGCAATTACATAGGATCCAGAAAAAAATGGAAACTCAGCTTAAAATTATATGTGAGGGTTGTCTTAATGAAAATTTCAAGCCGTGTGTCATGAAAAACGCAAATCAATTTCTCGAACCAGACCAGTTTTTGGTGATACATAACAATCAACAATACATTTTTCAAaagatcaaaaattttaaaatcaataatgaTGTTccagtttcaaaaaaagttacCAAAGACAATGAGTTTGTAAAGGTAGAAATTGGGTCTGATGGTGAAATTGTAACTAAACCCATAGACAATCCTAACGATAACGTTATAATTGTCAAGGATGCCAAAGAGAGTTCTAGTGATGTAGAGATAATAGAGGAGTTGGACACTATCATAGACAATTTAGATGATGCCGATGAGGAAGTAAAAGAGTTTTTAGGAAAGTACCAGGATAAAAAGTTGCAATTGGAAGAGCTTAAGTGCagGTTTTGTGAGAAAGTGTTCTCTGATCTGACAGAAGTGTCGGAGCATTGTGACGTTCACAAACACAATTCCGATGACGGCTCTGTGTTTCCATGCCCGCTGTGTGACTATGGATATGGAAAGTCGAAATGGCTCCAAGCGCACGTAAAGACCGCTCATGAGAAAGTTATAAAGGAAGAATCCAAACCGGAAGAACAGAAGTCAGTGGACACTATTAATGAGAACTCCGAGAAACCTGAGGAAACGTCAGATTCGAAGATTATTGTGAACAATATAGAAGTAAAAATGGAGGTGAAACAAGAAGTGGTGGACATCAGCGATGATGAAATATGGATCGTGAGAACGGCTGATGACGAGGCCGAACAGCAACTCCAGAAGCTGTTTGTTAAGGATAAAGACAGCACGAGCATTGATGAGAAATATCCATCATGTAAGAACTGCAATCAAGTGTTCCCTTCAGCGGAAACTCTTTCAGCTCACAAATGCCGTAGAGCGAAGAAAAGGAAAATTTCTAAAGACACGGCTCTTTGTATGCCCACTAAAGAAGACTTCATTAAGcgAGCTCAAGGGCGTCCGGTGAAAATGGGAACGACTCACAACCCGTTGGCTGTgAGGCCCAGGAAGAGGAGAAGCAATGGTGACAGTATGGAATCTCAAATAGTCACCTGTCATAACTGCAATGAGTCGTTCACTTCAAAAGTGAGATTGAAATTTCATATGCAATTTCACGAAGATACCGCGCTCTTAACGCCAGAGGGCAAATACAAGTGTCACCTCTGTGAGCAACTGTTCGATTGCGAGACGACCCTCTTTGACCACGTCCATTTCCAGCATCACAAGCGGCACAGATGGATGTGCCCGGTCGAGGGGTGCGGGAAGACATTTTATCTCAGGGCGACCCTGACGAAACACAGTCGCACGCACACAGACACGCGTCGTTACGTCTGCGTGACGTGCGGAAAAAGATTCCTAGATAAGCAGACTTTGGACGAACATGGAGTCACTCATTTGCAAATCAAACCGTTCCAATGCCACGTATGCTTGAAGCAACTGACCCGTCGCTCCCGGCTGCGGATGCACCTGAGGGCCCACGAGGAGGAGATCGCGCTGCGCTTGGTGTGCGTCTGCGCCGTCTGCAGCCGAGCGTTCAAAGATGCCAAGGACGCTCAGGAACACGCTACTAAGTCTCCTGAATGCATAGAAGCGTTCGCTAATGAATTGAAAGAAGAGAGCGAAGAGATTTTGGTCCAGCTGTCGCCGACCAGCGGGCTAGTGAGGGAGACGGTCAAGCGCGAAGATTCCCCAAAATTATGGAAGCCAATAAAGCAGCAGGTCTGTAGTGATGTAGCGAAGAGTCTCCTCTCGGAGCTCGCAGACGAGGCTCGCGGCATCATAAGGGTGGTGGAAATAGAGAAGGCGTTTAGGTGCGAGTTCTGCGAAGACGTATTTTATTTAGAGGAAGGCTTGAACAACCATCGTATCATACATAAGGACATCAAGAATCCGTTTACTTGTCACATATGTAAAGTGAGTTTCGCCACGTATTCGAGGTGTACTACCCATAAAACCACCCATGGCTTCTACAAGCGCCCTCTGCAGGAGGGCAAGAAGCGAAATGACGGGGAATCGAGCCAGTCTTCCGCGGGGATATTGGGATATGGAGATTTTCCAGTCGTCAAACACTTTTTGTGTGAGGATTGCGGTCGTTCCTACCTCCATTGGACGTACCTCCAAGTCCACAGGCGCATGAAGCATCCGAACGATAATTTTCAGCACAAGTGCAACCAATGCGATATGTCATTTCCCAATAGTTGGAGTGTGGCATACCATCGTAAGAAGATGCATGCGAAACCGATTTCAGACGAAGATGGGATCGGAACACAGAAACCTAGAGAAGATTACAGGATACCGTGCCGTGACTGCGATAAAGTGCTCCCAAATAAAACTGCACTCTATAAGCATAGGAAGAAGGAGCACAGCGATATGACTCTGGTAGAAGACTGTGAAGACCTCGAAAGTGGCGATTGTCGCAAACGTGCCGAAGATCTGCAAAAACCCCTCAAatCAACTGCGATGCGTAACCACCGCTTAATACATTCTGGAGTGCGCGCGTGGGCTTGCGAACAATGTCCAAAGAGATTTAGGATTCGTAACGACCTCAAGACGCATTTGCGACTGAAACATCCGTCTCATCTCACCATTATTGAGatAGCAACACCAAATCCGACAACAGATGACATTATCAACATATTGTCTCAACACAATATACCGCAGGATCGGGTCGTTGAAGTTACCAAAATTAACTTTTCAAAGGGCACTACTAGCGTAATACCGACGAGTGTCCGCGCTCTCTCAATGCTAGGCAACGCGCCCCGGACCCAAGTGCCTTTTCAGAGGCCTCCCCATAAGAGGATATCGGTGGGTGATTGGCAGCCGTTTAGACGAGGTCTGGGTATGGCGAGGTCCCCACATGTGGTCAACACCCTCCAAGGGGACCCAGGAGATGGATCGTATCCCACGACAGTTAATGCAACCGAAGAGGAGCTGTCAGATCTGAATGTGCAGTTGTTAATACGCGACGGTGCGATCGTGCATGGTGACCAACTGGTTCACATACAAATGGACAATACAATGATATTGCAgtag
- Protein Sequence
- MEMEEFQPTPLILCMENALGEEVSLQIEPHDDFQTFLEKAKLLLGFDVDINSITHNEPVSLTDNIYDYLMNSEYNQHGLSLDAPRNPQDDQLYILNDGTQICASQIHFDNDDPPIDLTAEKIPFVKYADDSLGDDEGDNIHQDVNIVKYNIVKSPIRWSKSPKNFIKSLPFKLVCNNTTSFEHQFTKYLESQNKTYATLNTVLNANKSPNTLIKDNFKKFDDYKEVCYTREDILNMFKDSPVNSLPFEYTERKHVRKTDPSRIHKCLKPKMPYIDTNGVIIGGFENQPCYICGKNVDYTEKLYLFDNKDQQLHRIQKKMETQLKIICEGCLNENFKPCVMKNANQFLEPDQFLVIHNNQQYIFQKIKNFKINNDVPVSKKVTKDNEFVKVEIGSDGEIVTKPIDNPNDNVIIVKDAKESSSDVEIIEELDTIIDNLDDADEEVKEFLGKYQDKKLQLEELKCRFCEKVFSDLTEVSEHCDVHKHNSDDGSVFPCPLCDYGYGKSKWLQAHVKTAHEKVIKEESKPEEQKSVDTINENSEKPEETSDSKIIVNNIEVKMEVKQEVVDISDDEIWIVRTADDEAEQQLQKLFVKDKDSTSIDEKYPSCKNCNQVFPSAETLSAHKCRRAKKRKISKDTALCMPTKEDFIKRAQGRPVKMGTTHNPLAVRPRKRRSNGDSMESQIVTCHNCNESFTSKVRLKFHMQFHEDTALLTPEGKYKCHLCEQLFDCETTLFDHVHFQHHKRHRWMCPVEGCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHVCLKQLTRRSRLRMHLRAHEEEIALRLVCVCAVCSRAFKDAKDAQEHATKSPECIEAFANELKEESEEILVQLSPTSGLVRETVKREDSPKLWKPIKQQVCSDVAKSLLSELADEARGIIRVVEIEKAFRCEFCEDVFYLEEGLNNHRIIHKDIKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPLQEGKKRNDGESSQSSAGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHPNDNFQHKCNQCDMSFPNSWSVAYHRKKMHAKPISDEDGIGTQKPREDYRIPCRDCDKVLPNKTALYKHRKKEHSDMTLVEDCEDLESGDCRKRAEDLQKPLKSTAMRNHRLIHSGVRAWACEQCPKRFRIRNDLKTHLRLKHPSHLTIIEIATPNPTTDDIINILSQHNIPQDRVVEVTKINFSKGTTSVIPTSVRALSMLGNAPRTQVPFQRPPHKRISVGDWQPFRRGLGMARSPHVVNTLQGDPGDGSYPTTVNATEEELSDLNVQLLIRDGAIVHGDQLVHIQMDNTMILQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -