Dpun004713.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022535.1:19932834-19944788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.086 5.6 8.0 0.1 1 23 652 675 652 675 0.93 2 11 2.1 1.4e+02 3.6 0.3 1 23 755 777 755 777 0.94 3 11 2.7e-05 0.0017 19.0 2.3 2 23 780 801 779 801 0.97 4 11 0.00012 0.0082 16.9 2.5 1 23 807 829 807 829 0.98 5 11 0.0068 0.45 11.4 2.5 2 23 836 857 835 858 0.94 6 11 0.44 29 5.7 3.4 5 23 871 889 870 889 0.97 7 11 0.016 1.1 10.2 1.9 2 23 895 917 894 917 0.96 8 11 0.0014 0.092 13.6 1.4 1 23 958 980 958 980 0.98 9 11 0.0041 0.27 12.1 7.2 1 23 986 1008 986 1008 0.98 10 11 4.8e-06 0.00031 21.4 1.3 1 23 1014 1038 1014 1038 0.98 11 11 0.001 0.068 14.0 5.2 1 23 1044 1066 1044 1067 0.95
Sequence Information
- Coding Sequence
- ATGCCTGCTGTCCTAACTGCTGGGTCTGATAATATGACTGGTGTTGGTCAAGGAACTTCTATGTACCAGAATGTGATGGTAGTTGACCAGTTTGGCAACACTTCCTGTATGTATACTACCCCACAGCAGTTGCTACCTAAGGCATGCACAACATCTATATATGCAGATAGCTTGTCTGTCAACAGTGTGGACAAATCTCTTGCAAATTTAAATGATCCTAAAACATTAGTAATTGAAGTAGGTCCTATAGTTCCACCTGCACCAGTGAGCTCTTGTTCAACAGTAAATAATATAGTGCCATTAACTGAACGTAGCAAACCTGATAAGCCAGATATAACTATAACTGAGAAAGTAGATGTGAAGAATGATGGGGCAAGTACAAGTAAGGGCCTTAAAATTCTTAGCAATATTAAAGTGGAAGTTCCTGTACAGCATAATAAAAACATGATAAACACAATTATGGACCTGACTGGTTCCAATGATTTGGATTATCCAGAAAATTCAGAAGTACCTGACTCATCAGAGAAAATAGTTCCAGATATGAAGGACAAAAATAGTATAAGTTCAATAAATGATGACACCACTCAACCTTCAACATCTAGTGGTGATAGTGTTGCCTCTGTTACATTTTCTGTGATAAAGAATGTGGGTAATCCATCTCTATACAAAGATTCAAACAAAACAAGTGCTGATATGAAATTGGACACAGATGCAGACAGTTGTCCTGTACCTGACCTCATATGCAATGAAAAGCCATCAATATCTCCTTGTAGTGAATTATCAGACCATGGAGACAATTCCACTGATCATTCCTTTGTACCCCCTAAACCTGAAATCAGCCAAATGCAAGTAGAAAAGAAACTTCATTTACCAGTAAAGTCATATAGAGCAAACCCACTGagacttaataatatatacgttaagaaacacaaaaaagtattacaaataaaaaattcaaagttTTGTTATACTTCTAGTAAACCAGAAGATTCTCTGCCTTCATCTTCTACAAATTGTACAACTtcagaaaaatcaaataaattaaactttattgataaacaattaaaaagttCTCAGTCAACCCTGCAGACCATATCTGTTGAAGAGATCAAACagaatgatgataatgatgatcaCAATTTTGATGCTGATACAGAAGAGCAGTCAATGGACTTGGAGCCAATAGCATCTTCAAGTTTGAGTCAGACAAATGAGTTTAACACAACTATTATAGAAGTAAAAGAAGAGATTAATTCAAGAGGATTTAGCAATCAGACTATGAACTCGGATCACAATCTGACACCTCTTGAGACACTACGGCCTATAAATGTCATCACATATAACAACATGCCACCTGGAGATTTCGATGAAGAATCCAACCATAGAGAGCTTTTGGATCTTGAAGCTGCATCAAAAAGTAAACAGTTTGTCAACATGATGAATGAGAACTATTTCGGAGATAATATTTATGCTGATTATTTTACACCTGACCGGGTCGAGTCATTTGACAGCCAAAGAGAAGCTGCGCATAAAGATGGTATGTATGGTATATGGGGGGAGCCATCACAGAAGGACAGTGAGTTTGTCTTGCCAAATTTTATTCATGAAAGTTATAAAATAGCTGAGAGTAGTGGGATTGATTATCCAGAGATTGGTGGGAAGCAGGAAGGGGATGGCGATAATAAGGCGGATGTATTGAGTGAGAGCAGGAGTGATGGAGAGCCAACCCTTAACATCTGTGCAGACGAGCGCATGCCTCCACGTGGGGAGCTCAGCGGCCAGGAGAGCAATGGGGATATGGAGTCGCCTTGGAGTGGGATGTATACAGAGGTGACGCCTTCGGAGCCCTACGATCTGATTGCCCGCGAGAGCTGGGTCTCTGATGGTTCAGAAGTGGACGCTACCGAGAAAAGGGACACTTTGGATGAACTTCAATTCCCGAAGAGTCGCATGTATTCGTGCATGCAGTGCGGCGCGAAGCTGCCCTCGCTGAAGGAGTTGAGGGCGCACAAGTCGCTCGCGCACGCGCTGCCCACCTGCTCCACCACGAAGACCACCTACAGCCGCATGGTCACCGCGAGGACTATCAAGAAGGAGGAGAAGATTGAAGAGACCGCTACTCTCCTCACCGgtaacCTCCTCACCATTGATTCGAAGGAGTCAATAACGAGTACAATACTGCAGGTTTACGACACAATAGAGGAGGCCAAGCCTAAATTGGAAACGTTAATAAAACAAGAGCCCAAGCGTAGAAGAAACGACTATGTATGTCCAACGTGCAAAGTGGACCAGATGACGAATGCAGCTTTCCATGCTCACCTCAAGGTCCATCCGTTGGAGTGCTTGACGTGTGGGAAATGCTTCTTCAAGAGGGCCAACCTTGCGCTGCACATGAAGACGCATCTGGGCATCAAGAATTACAAATGCGAGGTGTGCGAGAAGCGTTTCATAACCCGCCAGAAGCTGATGGAGCACCACAACGTGCATACGGGCCGGGCGCCCATCAAGTGCACGCTCTGCGACGACACCTTCCGCCGGTACTCTAACATGGTGCAACACAGGGCGCGCCACCACCTGCAGAAGCGCGCCAAGATCAAGGACTACATCTGCCACTGCGGCGCGATCTTCCACACGAAGGCGAAGCTGCGCTGGCACAAGGAGACGCACGAGGAGAAGCCCAAGTCGTGCCTCTACTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACGAGGCACGTGCGCCGCTCGCACAACGAGTACTACGTCGCCGAGCCGCTCCGCGGGAAGGTCGACAACGTGCCCTGTCCGGTCTGCAAACAGGGCAACCTGAAACTGCACAGATGGACCCACATGTCCCGTTCGGCGAAGCCGTTCAAGTGTCACCTGTGCAAGGGCGCCTTCATACGACAAACCGAGTACGTGTCGCACATGAACGCGCACAAGTCCGTACGGCCCTACACGTGCAACTACTGCGGCTGTCAGTTCATAAGGAAGTACAACTGTCAGAGGCACGTCCGCGAACACGAAATCGCGAAGAAGTACGTCTGCAAAGTGCCTGAATGCGGTAAGTCGTTCCATCGTAGTTATTACCTGTCCGAGCACATGAAGGTGCACAGTGGCGCCAGACCGTTCTCGTGTACGATCTGCGGCAAAACCTCTAGCAATAAGTCGAATCATAATAAACATGTGAAAATACATCACGCGAGGGAACCCTTCGCCACCGAAGCGTAA
- Protein Sequence
- MPAVLTAGSDNMTGVGQGTSMYQNVMVVDQFGNTSCMYTTPQQLLPKACTTSIYADSLSVNSVDKSLANLNDPKTLVIEVGPIVPPAPVSSCSTVNNIVPLTERSKPDKPDITITEKVDVKNDGASTSKGLKILSNIKVEVPVQHNKNMINTIMDLTGSNDLDYPENSEVPDSSEKIVPDMKDKNSISSINDDTTQPSTSSGDSVASVTFSVIKNVGNPSLYKDSNKTSADMKLDTDADSCPVPDLICNEKPSISPCSELSDHGDNSTDHSFVPPKPEISQMQVEKKLHLPVKSYRANPLRLNNIYVKKHKKVLQIKNSKFCYTSSKPEDSLPSSSTNCTTSEKSNKLNFIDKQLKSSQSTLQTISVEEIKQNDDNDDHNFDADTEEQSMDLEPIASSSLSQTNEFNTTIIEVKEEINSRGFSNQTMNSDHNLTPLETLRPINVITYNNMPPGDFDEESNHRELLDLEAASKSKQFVNMMNENYFGDNIYADYFTPDRVESFDSQREAAHKDGMYGIWGEPSQKDSEFVLPNFIHESYKIAESSGIDYPEIGGKQEGDGDNKADVLSESRSDGEPTLNICADERMPPRGELSGQESNGDMESPWSGMYTEVTPSEPYDLIARESWVSDGSEVDATEKRDTLDELQFPKSRMYSCMQCGAKLPSLKELRAHKSLAHALPTCSTTKTTYSRMVTARTIKKEEKIEETATLLTGNLLTIDSKESITSTILQVYDTIEEAKPKLETLIKQEPKRRRNDYVCPTCKVDQMTNAAFHAHLKVHPLECLTCGKCFFKRANLALHMKTHLGIKNYKCEVCEKRFITRQKLMEHHNVHTGRAPIKCTLCDDTFRRYSNMVQHRARHHLQKRAKIKDYICHCGAIFHTKAKLRWHKETHEEKPKSCLYCSDKFVHAASLTRHVRRSHNEYYVAEPLRGKVDNVPCPVCKQGNLKLHRWTHMSRSAKPFKCHLCKGAFIRQTEYVSHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEIAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCTICGKTSSNKSNHNKHVKIHHAREPFATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -