Dpun021789.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022538.1:9075635-9093513[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.2 13 6.8 0.0 3 23 181 201 179 201 0.95 2 11 0.0068 0.44 11.5 0.1 2 23 206 227 205 227 0.96 3 11 0.57 38 5.4 7.6 2 23 234 256 233 256 0.94 4 11 0.18 12 7.0 0.7 2 20 264 282 263 282 0.95 5 11 2.1e-06 0.00014 22.5 1.7 1 23 291 313 291 313 0.98 6 11 9.5e-05 0.0062 17.3 0.2 1 23 319 342 319 342 0.96 7 11 10 6.5e+02 1.5 3.3 2 19 348 365 347 367 0.82 8 11 0.01 0.67 10.9 0.5 3 23 375 394 374 394 0.97 9 11 4.1e-05 0.0027 18.4 0.8 1 23 400 422 400 422 0.98 10 11 0.0077 0.5 11.3 0.8 2 23 429 450 428 450 0.97 11 11 4.3e-07 2.8e-05 24.7 1.5 1 23 456 478 456 478 0.98
Sequence Information
- Coding Sequence
- ATGGACGTCTGTAGAGTGTGTTTGTCTACTGATAGTACTATGATTCCATTAGATGAATCATTCATAGAAATGTATAACACTTTAACAAGTTTAAATgtCAAAATGTGTGATGAATTGCCACAGTATACATGTGAGAAGTGTGTACAAGATGTCAAAACTTTTATGGAATTCAGAGAAAAGTCTATTTCATCTGAAACAGCTTTAAGAAGGATTTTTACTGGATTCAAACCCGAGGGCAATATTTCAAACGAAGAGAACAAATGTACTGAATTAGCTGATAATAATTCAATGAtacttaaaaaagaaataaaaaatgaaatatttgatGATGAACTACTTGATGACGCCTTTGATGATACTTTAATAGATTGCAAAGAAGATATTCTTTTAGGATTAGATACATTGCAagATGTTAAACCAGAAAGAAGACCTAAGAGGATAAGAATAAAGCGtaagaagaaattaaaaattaataacaattctAATTTGCTATGGAATGTGCAGGCAGATATAAAACAAGAAGAATCTGAAAAGTTGTTCTGtgGGTTATGTAAAGCAGCATTCGAAGATGTACTTGAATTAAATGAACATTTAGAAAAGCATATAAAAGATACACAATGTGCCATATGCAATGAAGTTACCTTTACATGGGCAGAGTTACTCAGCCATAGACTTAACCATGTACCAGTCAAACAGAAACGCTGTCATTTGTGCTACAAAAGATTTACTACatgtaattatttacaattccACTATATGAAAGAGCATTTCGGAGAGAACTCTTCATTAACATGCAGCTTTTGTTTTTCGTCGTATGATTCTCCAAGAAAACTTCGAAAGCATATATGGGCAATgcattctaataaaaaatacatttgtgatTACTGCTCTAAATGTTTTTCTGTCAGAGCAAATTTGAGGTCACATATTATATCGCATATGAAGCGAAAGAATTATGTCTGTGATCTGTGCGGAGTGTCTTTCAACTATTTAAGCGGTCTCAAGGATCACACAATTCGAAAACATGTGTCATCAAAAGTTTACTGCAGAAGTTGCAAAAGACCTTTCTCATCACAAGATGACCATGACAGACACAAATGTGCGAACATTAAAAATGTGTTATGTCCGACGTGTGGAAAATATTATACCACGTCACAGATAAAGCGCCATTTAGTTACtcatacaaatataacaacataTAAGTGCAACAGGTGTCCGGCTACTTATAAGTCGAGGTCTGGCTTGAAAGTCCATTTAGACAAACACGACGGCAACAAAACGCAACAGTGTCAGTTTTGTGCGGCAAAGTTTTACAGTGGGTCAACACTTATTAAACACCGAAGAATACATACAGGTGAAAAGCCGTACGTGTGTAAAGTATGTTCCAAGGCATTCACGGGAAACCACAATCTGAAGGTTCATATGAAGGTGCACGGCGAATACCTAGTCAATAGGAAAGATAAGACATCTGAGACAGATACTAATCAccatatatttttgaatgaaaatctttaa
- Protein Sequence
- MDVCRVCLSTDSTMIPLDESFIEMYNTLTSLNVKMCDELPQYTCEKCVQDVKTFMEFREKSISSETALRRIFTGFKPEGNISNEENKCTELADNNSMILKKEIKNEIFDDELLDDAFDDTLIDCKEDILLGLDTLQDVKPERRPKRIRIKRKKKLKINNNSNLLWNVQADIKQEESEKLFCGLCKAAFEDVLELNEHLEKHIKDTQCAICNEVTFTWAELLSHRLNHVPVKQKRCHLCYKRFTTCNYLQFHYMKEHFGENSSLTCSFCFSSYDSPRKLRKHIWAMHSNKKYICDYCSKCFSVRANLRSHIISHMKRKNYVCDLCGVSFNYLSGLKDHTIRKHVSSKVYCRSCKRPFSSQDDHDRHKCANIKNVLCPTCGKYYTTSQIKRHLVTHTNITTYKCNRCPATYKSRSGLKVHLDKHDGNKTQQCQFCAAKFYSGSTLIKHRRIHTGEKPYVCKVCSKAFTGNHNLKVHMKVHGEYLVNRKDKTSETDTNHHIFLNENL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00432575;
- 90% Identity
- iTF_00432575;
- 80% Identity
- -