Dpun011937.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022556.1:6505953-6544875[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0065 0.42 11.5 1.0 1 23 231 253 231 253 0.97 2 12 0.002 0.13 13.1 4.1 1 23 260 283 260 283 0.93 3 12 4.2 2.8e+02 2.7 2.9 1 23 287 309 287 309 0.96 4 12 0.00075 0.049 14.5 2.2 1 23 314 337 314 337 0.98 5 12 0.017 1.1 10.2 0.8 2 23 342 364 342 364 0.93 6 12 0.0044 0.29 12.1 1.4 2 21 382 401 381 406 0.91 7 12 0.38 25 6.0 0.2 2 23 415 435 414 435 0.95 8 12 4.4e-05 0.0029 18.3 0.3 3 23 461 482 459 482 0.96 9 12 7.4e-06 0.00048 20.8 0.2 2 23 492 513 491 513 0.97 10 12 3.4e-06 0.00022 21.9 2.0 1 23 519 541 519 541 0.98 11 12 7e-06 0.00046 20.9 5.9 1 23 547 569 547 569 0.98 12 12 1.3e-06 8.7e-05 23.1 0.7 1 23 575 598 575 598 0.98
Sequence Information
- Coding Sequence
- aTGTCTAAAATAGCATTATGTAGGGTGTGTTTTAGTGTCGATAGACGTATGTACCCAATAAACAACAGTTTATTACAAGAAATATGGGAAAGACTCACAAATACTagtTTTGATACCAGTGACGGGAAACCACTGTTTGTGTGCTACATATGCTATGCTCACCTGAGAAAGTCACATCAATTGATGAAGAACGCTCTGAAGGCTGAGGAGTTGCTAACAGCATTCATTGGAAATGGTTTGGAGCAATCAGAGAGCCTGATATCTCTGATAGCCAGCCAGACATACAAGTTTGAGTATAATTACGCTATTGCCCCACAAGACTGCATAGAATATAATGTAAATGACAATGATGTCGTGGAAGAACTAAAGAAGGAGAATCAAGAAGAGGGTGAGGTTAATATCAAGGAGGAAGGAGATGTCTCAGACTCGAACCATAAAGAGAGTATAGGCATAGATTATGTAGACTCTTGCACCGATTCAGACGACAATGTCCCACTGAAGACCATAAGTGTAAAGAAGCAGGTGAAAAGAGAAGTTCGTAAGAGAATCGAGAGGAAACCAAGGAAGATTATACTTAAGAAAATTGATAAAGGTAAAAAACTGGATGTGATCGAAATAGATTTAACGAAGGAGGAGCAAATCAACGAGTTGATGAAGCGATGTCAAACACAGAACTATATGTATTCACCATTCCGATGTGAGCTTTGCTATAAAGGATTCGTAGACACTAAAGCGTACGAGAATCACAAGGACAGGCATAGCGagAGCAGTGGCGCCCACGAGTGCGAGATATGCCACATGCGCTATAAAACCGCGCGCCAACTCAAAACGCACCGATACAACATACACGAGAAACATTACAAGTGTAAACGGTGCTCGTTCATATCGCACACGCCGAATCAAGCGAAACAACACGAGAAATGGCACGAGGGATACACGTACGTCTGCAAACTGTGCAGCCAAAAGTTTACAAAATCGACTTCGTATCTATCGCACGTGCGAAAGGTACACCCCTCGGAGAATGTATGCAATATATGCGGCGAGTGCTTCGTTGGGAGACTGGGGTTGATGTTGCACAAAACCAAAACGCACAGGAACGAGGAGAGGCGAAGTGATAACGGAGATGAATTGGCTTCGGACTGCTTCTGCAGCGAGTGCAACATGCAGTTCTCGAATCTGGACGCGTGGAAGAGGCACATACTGAGCTCAGTGAAACACACGCTGGCGAACGAGAATGACACCCAATGCAAGATCTGCCGTCAAAACGTTGTCAGAGGGAATCTGGTGGCGCACTTGAAAGAGCACGACAAGAAGATGAGAAAAGAGGAGATGAAGAGGAAAACTGCGGCCGTCAACGAAGTACGGGTCGCTTCGCTGGCCTGCAATGAATGCGGGGCGAAATTCAGTACGAGAGTAAAACTGACGGCTCACGTGAAGAGGATGCACCTCGGCGTCAAATACGACAAGAATATCGTTTGCGAGGTGTGCGGGAAGAAATTTATGTCTAATGCGGCCCTTACATACCACCAACGCTCGCATACCGGGGAGCGTCCATTCGAGTGCACCACGTGCGGGAAACGCTTCCGCGAGACCTACCAGCTGCGGCTGCACGTCCGCACGCACACCGGTGAGCGGCCCTACTGCTGTAACCAGTGCGGAAAACGCTTCTGCCAGAAGCCGGCTTTGAACCGCCACTATCGGGTGCATACAGGATCGAAGCCTTACGAGTGTCAGTATTGTTCCAGAGCTTTCAGCCAATCGAACTCATTGAAAGGCCACATAAGGACGGTCCACCTCAAAATACCAGCAAAGAGGAGGAAAACTCAAAACGCCGTGGAAATTGTGCCCATTGTGGAAAAACAAGACTTGCATGATGctgtgttataa
- Protein Sequence
- MSKIALCRVCFSVDRRMYPINNSLLQEIWERLTNTSFDTSDGKPLFVCYICYAHLRKSHQLMKNALKAEELLTAFIGNGLEQSESLISLIASQTYKFEYNYAIAPQDCIEYNVNDNDVVEELKKENQEEGEVNIKEEGDVSDSNHKESIGIDYVDSCTDSDDNVPLKTISVKKQVKREVRKRIERKPRKIILKKIDKGKKLDVIEIDLTKEEQINELMKRCQTQNYMYSPFRCELCYKGFVDTKAYENHKDRHSESSGAHECEICHMRYKTARQLKTHRYNIHEKHYKCKRCSFISHTPNQAKQHEKWHEGYTYVCKLCSQKFTKSTSYLSHVRKVHPSENVCNICGECFVGRLGLMLHKTKTHRNEERRSDNGDELASDCFCSECNMQFSNLDAWKRHILSSVKHTLANENDTQCKICRQNVVRGNLVAHLKEHDKKMRKEEMKRKTAAVNEVRVASLACNECGAKFSTRVKLTAHVKRMHLGVKYDKNIVCEVCGKKFMSNAALTYHQRSHTGERPFECTTCGKRFRETYQLRLHVRTHTGERPYCCNQCGKRFCQKPALNRHYRVHTGSKPYECQYCSRAFSQSNSLKGHIRTVHLKIPAKRRKTQNAVEIVPIVEKQDLHDAVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -