Dpun015931.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022555.1:1744422-1748678[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0066 0.43 11.5 0.4 1 23 19 42 19 42 0.95 2 18 0.0034 0.22 12.4 1.7 1 23 49 72 49 72 0.97 3 18 0.00054 0.035 14.9 0.8 5 23 83 101 81 101 0.94 4 18 5.9e-06 0.00039 21.1 2.2 1 23 107 129 107 129 0.98 5 18 0.022 1.4 9.9 0.6 1 23 210 233 210 233 0.93 6 18 0.13 8.5 7.4 2.0 2 23 260 281 259 281 0.96 7 18 0.01 0.66 10.9 0.5 1 23 303 325 303 325 0.98 8 18 4.3e-05 0.0028 18.4 1.0 1 23 329 351 329 351 0.97 9 18 5.6 3.7e+02 2.3 0.8 1 22 356 377 356 379 0.77 10 18 0.023 1.5 9.8 0.4 1 23 385 408 385 408 0.92 11 18 0.063 4.1 8.4 1.6 1 14 414 427 414 428 0.89 12 18 0.094 6.1 7.9 0.3 1 23 483 505 483 505 0.95 13 18 0.0025 0.16 12.8 0.7 2 23 532 554 531 554 0.95 14 18 0.0061 0.4 11.6 1.6 1 23 576 598 576 598 0.98 15 18 3.2e-06 0.00021 21.9 1.1 1 23 602 624 602 624 0.98 16 18 0.19 13 6.9 0.1 1 23 629 652 629 652 0.94 17 18 0.035 2.3 9.2 1.8 1 23 658 681 658 681 0.96 18 18 6.1 4e+02 2.2 0.1 1 12 732 743 732 750 0.83
Sequence Information
- Coding Sequence
- ATGAGATCTGCTAGAGATGCTCACAAAGCAACTATGCATTCTAAAAGTCCAAGATATGAATGCCCTTATTGTAATATGCGTTTTGATGGATACTACGACCGCATGTCGCATCTAAAAGAAGCACATCGTGAAAAGGAGGTGTCTTACGATTGCAGCCATTGTGAGCTCTCTTTCAAAACATCAGGAAAGAGATCAGTTCACGTTCGATCTGTACACTTTCCGCCAAAGTTGGAATTTGGGTGCATTTATTGCGAATGGCAGTTTAAAACCAACTACGAGTTAAAGAGGCATATGGTCAAGCATACTGGAGAAAGGAACTTCCACTGCTCTGTGTGTGGTAGCTCATTTTCAAGGAACAAAGCGTTGACAAGTCACATGAAGATCCACCAGAAGTTGCTCTGCAAGTCTTGTTCTGATATAGAAGCTCAGGGAAATGTAAGTCAAATAAAACGTGGCAGAAAATTAAAGGAAGTCGTTTGCGCTCGTCAGATGCGTAGACGGCGTCGGGCTAACAATGAGCTTCCAGAGCATCTCAAGAAACGTCTATCTAAACAAATGATGAGAAAGAACGCTATGATCCTTCTAGAATGCTCTACTGCTTGGGCGTTTAGATGGTTTCATGGGATGTTCTATTGTAGTTACTGTGATGCTAAATTCCCCGACTCCTTGCCTTTACGTGAACACTTTGAAAAATATCATTTGAAAGATATACCAACTACAGATATATTCGCGAAACTTTCTCAGAACAATATGGTCAAAGTTGATATTGCAAAATTGAATTGCAGATTGTGTAGTTGTGAATTAAATAGTTTAGATTCTCTTAAAGGACATATGAAGACTCACGAGATAAACCTACATGAGGGTTATAGTGATGGAATTCTCCCTTTTAAGCTGAACGATGAGGAATTTCAATGTCAAATCTGCCTTGCGAGTTTCTCGAATTTTCCGAGAGTTAATGAACATATGAACAAACATTATCAAAACCATGTTTGTGACGAATGTGGGAAAGCGTTTATATCAGAATCTAGGTTTCGCAAACACGCACAGTCTCACGAATCGGGCAGCTTTCCTTGCTCCCTATGTGATTTAGTGTTGACAACTAGGGTAGCAAGAATGTGTCATAGACAGAAAGTTCACAGGAAAGGAATTCGATACAACTGCCCAAGATGTCCAGAAGTCTTTATATCGTACCATGGCAGAATTAAGCACTTGACTGAGGCTCACCAACAAAAAAAGGAATATGATTGTAATATTTGCGGCAAGTTTTTTGATACGAGCTACAAAAGAGATGGAACTGCAGAAGAGAAACGTGATGTCAGTCCAGAGGCGAGGCCCATTAAAATTGTATGGAAACGCAAACAAGGCGCGTTGACCGAAGATAAAGCGAACGCAGCTTTTATTCTAGAACATTCCAACGCTGTTGTATTCAGATGGCAACGTGGAAAGTTTATGTGCGCTTACTGTCCCAAAATATGTGCTAACGTTGCCGAAGTTCGGACACATTCCGTCACACACAACCCATTAGATTTACTACTAAAACCTATAAAAGAAGTTAGGAACAGTTTTCCATTACGCGTGGATATTACAAATTTAACTTGTTCGGTATGTAATCACGCAGTTAACACCGTAGATAATCTCAAATCCCATTTAAGAGAAACCCACGGCAAGATTGCGAATGAGAAATACACTGACGGGTTGATACCTTTCATTCTGACTGGTAAAGATTATAGCTGTTTGCACTGTAAGGAGGTATTCGAAGGATTCATGAGCCTCTTCATACATATGAACCAGCATTATCAAAGTTTCGTTTGCGATGAATGCGGAAAAGGATATTCTGCAAATCACAAGCTCAGAGCTCATCAAAGAACACATGTGTTAGGAAAATTTGCTTGTTCCAGATGTGATCTGATTTTTCCGAATAGCATTGTGAGGAACAGACATATTACAAGTGTTCATGGTCGGAAAGAGCGATATAGATGTCCTATTTGTGACTCTTATTTCGATTCTTACCATTCCAGATTGAGGCATTTAGATCGAGTGCATGGTCAAAAATCAGAATATAAATGTAGTTTATGGCCAACCGACTACATAGTAAAATGGACACCGAAGCGCAAGTTTTATGATCACAGAGACAATGCCGCGATCATTATAGGCTGTTCGAATGTGATACCTTTCCGTTGGAGGAGTGGTGCTTTTACATGCGCGTTTTGTCCACTATCTTTCGGTGATTTGACGCTACAAGAGCACATATAG
- Protein Sequence
- MRSARDAHKATMHSKSPRYECPYCNMRFDGYYDRMSHLKEAHREKEVSYDCSHCELSFKTSGKRSVHVRSVHFPPKLEFGCIYCEWQFKTNYELKRHMVKHTGERNFHCSVCGSSFSRNKALTSHMKIHQKLLCKSCSDIEAQGNVSQIKRGRKLKEVVCARQMRRRRRANNELPEHLKKRLSKQMMRKNAMILLECSTAWAFRWFHGMFYCSYCDAKFPDSLPLREHFEKYHLKDIPTTDIFAKLSQNNMVKVDIAKLNCRLCSCELNSLDSLKGHMKTHEINLHEGYSDGILPFKLNDEEFQCQICLASFSNFPRVNEHMNKHYQNHVCDECGKAFISESRFRKHAQSHESGSFPCSLCDLVLTTRVARMCHRQKVHRKGIRYNCPRCPEVFISYHGRIKHLTEAHQQKKEYDCNICGKFFDTSYKRDGTAEEKRDVSPEARPIKIVWKRKQGALTEDKANAAFILEHSNAVVFRWQRGKFMCAYCPKICANVAEVRTHSVTHNPLDLLLKPIKEVRNSFPLRVDITNLTCSVCNHAVNTVDNLKSHLRETHGKIANEKYTDGLIPFILTGKDYSCLHCKEVFEGFMSLFIHMNQHYQSFVCDECGKGYSANHKLRAHQRTHVLGKFACSRCDLIFPNSIVRNRHITSVHGRKERYRCPICDSYFDSYHSRLRHLDRVHGQKSEYKCSLWPTDYIVKWTPKRKFYDHRDNAAIIIGCSNVIPFRWRSGAFTCAFCPLSFGDLTLQEHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -