Dpun015921.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022555.1:1093236-1099198[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0004 0.026 15.3 0.1 1 23 149 172 149 172 0.97 2 15 0.0003 0.02 15.7 0.5 2 23 247 268 246 268 0.97 3 15 0.0099 0.65 10.9 1.1 1 23 272 294 272 294 0.99 4 15 0.0024 0.15 12.9 1.3 1 23 299 322 299 322 0.96 5 15 0.00096 0.063 14.1 0.5 2 23 330 352 329 352 0.92 6 15 0.022 1.5 9.8 1.2 1 23 359 382 359 382 0.97 7 15 0.011 0.74 10.8 0.6 1 23 494 517 494 517 0.94 8 15 0.064 4.2 8.4 0.4 3 23 594 614 592 614 0.96 9 15 5.1e-05 0.0034 18.1 1.0 1 23 618 640 618 640 0.98 10 15 0.023 1.5 9.8 4.2 1 23 645 668 645 668 0.96 11 15 0.0011 0.072 13.9 0.3 2 23 676 698 675 698 0.92 12 15 0.00049 0.032 15.0 0.5 2 23 706 728 705 728 0.95 13 15 4.3e-06 0.00028 21.5 5.3 1 23 734 756 734 756 0.98 14 15 6.5e-06 0.00042 21.0 1.3 1 23 762 784 762 784 0.99 15 15 0.0059 0.39 11.6 2.5 1 23 790 813 790 813 0.97
Sequence Information
- Coding Sequence
- ATGCACATCAAAATTCTTCTTAgtAACTCGGGCGGCACGACTTTAGTAAAAAGTGAGCCACATACAGTAAGTACCACTAAGACTAAAAGAATAATAAGGCCAACCAAAGAATGGAGCCTCGCAAAAAAACATCGATTAAGTGACCATGATTACAGTTACTCTGTTAAATCCAATAAATCATCAACTCCTGAAGTGGACAAAGCTCTGACAAATATCACTGAGGAAATAGGAGTAGCTTATGATTGGGGACTCCCAATCAAAGAGAAAGGCAAGAAGATTTCAATTAAAGACGAAGATAATTCTGTCCATGACAGAACTATGACTAAAGACTTAGAAAAGTTTGCGCCAGATAAAGAGGAAATAAACAAGCATTTAGAAAACATTAACACTCTATTACAGTACACGAATGCAACACTTATAAAGACTTACTCCACTGGTTTTGGTTACGTATGCTGGTACTGCCCTGAAGCCTATAAAATTGCAGCGGATTTAAAAAGACATACTCAAAAGGAACACCTTGATCGACTGATTCACCCAAAGAAAGGTACGGACAGGTACTACTCAGCCCGTGAGTTTCTCGCCAAGTTGGATATAACTTCATTAATCTGCGTCTTGTGCGATGAACCGATTGACAGTCTCGATAAAGCAGTAGATCATCTGGTAACTGTTCACAACAAGATATTTCATATTGATATCAAGAATCAAATAATTCCTTTCAAGTTTGGTGGGAAAAAGTTGAAGTGTGTTATATGCGATATAgagtttaataattttaaaatgcttCTGAACCACATGAACAGACATTATGGTAACTATCAGTGTCTAAAATGTAATCTTGCATTTGTGAATTATATGATACTAAGAATGCACTACCGTACGCATATTGAAGGGAATTACAAGTGTAAATATTGTGAGAAAGTATTTGCGTCTATTAACAAAAGAACAATGCATGAGAGATCTGTCCATGTGGTAAACCACAAAAGGAATAAATGTCCCCACTGCGGTGAGATGTTTGTTGATTACTCTAAAAGGAATGATCATATGGTCGAGGTGCATGGTGAAGAGCGTCAAGAGTTTAAATGTAATGCCTGTGATGCGGTGTACAATACACAAAAAAGTCTAACTTTTCATGTTAAGACTTATCATTTAATGATACGTAATGTTCAATGTATACCCAGCGGTTCGGCTTTAATCAAAATAGAGCCACCTGATGTGagtagtgatgatgatatgaCAGTAGCATCTTTTAAAGAAATGATATGTGATACCAAAACTGAAAAAGAAACGACACCCACAAAAGATTCATATACTGGAACGAAAAAGAAAGTTAAAGTGGAAAAAGTGGGAAGATGTAACGATAAAAAACTAATTGCATTGATACCGCCTAAGAACGATATAGAGAAGCATCTTCATAACATCCATACTATAGTTCTCTACACGAATGCTACACCGATAAAATTCTTTAACCTCGCTTTGGGCTACTCGTGTCAATACTGTCGCAACCGTTATATGAATCCAGCTGATCTTAAAACTCATACTTTAGAAGAACACGATGTTGATGAAAAAACATCTTTCTTGAAGAAACCAAAGAGAGCGTATTCTGCTCGTGAATTTATAGCCAGACTTGATGTAACATCTTTAATCTGTTTTATATGCAGACAGACGATGGAGAGCTTAGAGAAAGCCATGGATCATCTGGTAGCTGACCACAATAAGACTTTATACACCGACATTAAAAGTCAAATTGTGCCGTTCAATTTCAACGGGGAGAAATGGATATGTGTCAACTGTCAAATGCAGTTTAACACTTTTAATATGATACAGACGCATATGAATGTTCATTATGGTAACTACCAATGTCCTGTTTGCGATCGtgcttatgttaattttaaaacactcAACACGCACTACTATACTCACAAGGAGGGTAGTTACACCTGTCGTCACTGTTCGAAGACATTCAATACGCCCGTTAAAAGGTCGTATCATGAGAAGACTGTACACCTTACAGGTCGGAATAGAAACAAATGTCCTCATTGCGATGAAACATTTGCTGATTATTATCAAAGAATCGATCATATGGTCGAAGCACATGGAGCTGAACCCCTGTCTCTTAAATGTAACGCCTGCGAAGCAACATTCAAAACACAAAGAAGCCTAACAGTACACGTAAGAAATCTCCACTTAATGGAGCGGAAGTACAAATGCAAGTATTGCGGGAAGAAATTCTTCAGAAATGATTGCTTGAAGGAGCACATGTCTATCCATTCTGGCAAGAAGGAATATCAATGTGACTTGTGCAAGAAAGCTTACATGAGGAAAGCGACCCTAAAGGATCATCTGAGAACTCATATCGAGGATAAGAAGTATATATGCAGACATTGTACTATCTCTTATGTTATGAAGTACAGTTGGAAAACTCATATGCAAGTTAAACATGGCGAAGCAGTTGAATAA
- Protein Sequence
- MHIKILLSNSGGTTLVKSEPHTVSTTKTKRIIRPTKEWSLAKKHRLSDHDYSYSVKSNKSSTPEVDKALTNITEEIGVAYDWGLPIKEKGKKISIKDEDNSVHDRTMTKDLEKFAPDKEEINKHLENINTLLQYTNATLIKTYSTGFGYVCWYCPEAYKIAADLKRHTQKEHLDRLIHPKKGTDRYYSAREFLAKLDITSLICVLCDEPIDSLDKAVDHLVTVHNKIFHIDIKNQIIPFKFGGKKLKCVICDIEFNNFKMLLNHMNRHYGNYQCLKCNLAFVNYMILRMHYRTHIEGNYKCKYCEKVFASINKRTMHERSVHVVNHKRNKCPHCGEMFVDYSKRNDHMVEVHGEERQEFKCNACDAVYNTQKSLTFHVKTYHLMIRNVQCIPSGSALIKIEPPDVSSDDDMTVASFKEMICDTKTEKETTPTKDSYTGTKKKVKVEKVGRCNDKKLIALIPPKNDIEKHLHNIHTIVLYTNATPIKFFNLALGYSCQYCRNRYMNPADLKTHTLEEHDVDEKTSFLKKPKRAYSAREFIARLDVTSLICFICRQTMESLEKAMDHLVADHNKTLYTDIKSQIVPFNFNGEKWICVNCQMQFNTFNMIQTHMNVHYGNYQCPVCDRAYVNFKTLNTHYYTHKEGSYTCRHCSKTFNTPVKRSYHEKTVHLTGRNRNKCPHCDETFADYYQRIDHMVEAHGAEPLSLKCNACEATFKTQRSLTVHVRNLHLMERKYKCKYCGKKFFRNDCLKEHMSIHSGKKEYQCDLCKKAYMRKATLKDHLRTHIEDKKYICRHCTISYVMKYSWKTHMQVKHGEAVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -