Dpun011605.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022556.1:7729400-7766022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.014 0.91 10.5 2.5 1 23 300 323 300 323 0.90 2 24 0.0014 0.089 13.7 2.0 2 23 331 352 330 352 0.97 3 24 2 1.3e+02 3.7 4.0 1 23 356 378 356 378 0.97 4 24 0.093 6.1 7.9 6.5 1 23 383 405 383 406 0.95 5 24 0.015 0.98 10.4 0.1 3 23 413 434 413 434 0.97 6 24 0.42 27 5.8 0.1 2 20 444 462 444 464 0.92 7 24 1.2 78 4.4 0.1 2 23 473 495 472 495 0.92 8 24 0.00042 0.028 15.3 2.6 1 23 501 524 501 524 0.98 9 24 0.018 1.2 10.1 0.8 2 23 540 561 539 561 0.96 10 24 8e-06 0.00052 20.7 3.4 1 23 567 589 567 589 0.99 11 24 8.6e-05 0.0056 17.4 0.2 1 21 595 615 595 616 0.94 12 24 0.23 15 6.6 3.4 6 23 935 952 933 952 0.97 13 24 0.0004 0.026 15.3 2.6 1 23 958 981 958 981 0.97 14 24 0.0032 0.21 12.5 7.2 1 23 987 1009 987 1009 0.98 15 24 6.9e-05 0.0045 17.7 2.7 1 23 1015 1038 1015 1038 0.97 16 24 0.0041 0.27 12.2 5.9 1 23 1044 1066 1044 1066 0.98 17 24 0.00086 0.056 14.3 1.6 1 23 1072 1095 1072 1095 0.97 18 24 0.068 4.4 8.3 8.9 1 23 1101 1123 1101 1123 0.98 19 24 0.0089 0.58 11.1 1.3 1 23 1129 1152 1129 1152 0.96 20 24 0.0033 0.22 12.4 6.7 1 23 1158 1180 1158 1180 0.98 21 24 0.0036 0.23 12.3 2.3 1 23 1186 1209 1186 1209 0.97 22 24 0.3 20 6.3 6.4 1 23 1215 1237 1215 1237 0.97 23 24 0.63 41 5.3 3.8 1 23 1243 1266 1243 1266 0.97 24 24 0.00071 0.047 14.5 0.9 1 23 1272 1295 1272 1295 0.95
Sequence Information
- Coding Sequence
- atgtataccGGTGCTCAAGATGAGTTATTAATTTGTCGCGGGTGCCTCAGTGCCGATGGAAAACCCTTCGACACAAATATGAAACGATCATCATTGGATTATTCTGTGTTGATCGGAATCCAAATACAAGAGCATGATGGTTTGCCACATCACTTCTGTTACATGTGCAGTGCTTTACTGCGCAAGTTTATAAGATTCAGGAACAAATGCTTAAACAGCAAACATTTACTTGAAGACATACAAAGCAATCATGTATCAAAAAGCAAATTGAAAGAATTTATCAACTCGGATTCCTATTGCcaatatacaaacacacaaacatatGAATACCAACCTGACAAAGATAATGAAACAGAAGTACTATTTGAAAACAAAGACTCCATCAAAACTTCAATCCCTAATGTGAAATTCAAAGAAGAAATTGATCTGTCAACAGTCATACAAATCAAAAATGAAGATACAAACTTTAGTCAGAATTCTGATTTATATGATTCTGATGAACAATCTTTAGtcaataaatattcaacatcTAGCATCAGTAATGCAACTAACGAAATCAAAAGTATGAGTATAAAAGATAATATTGAGTCAGATTCATCGGATAATCAATCATTAGTCACATTTAAATCTAACAAACCAAACACATCTAAAAAGAGAAACACTAAGTTACAACTAGCCGTGCACACTAAAAAGAACCTAGTCAGAAATTTCACACTGGACAATTTGAAGTCAGAATGTACAAAAGTTAGTCAGAAAGAGGAAAAGAGATTTGAATCTAAAGAGaatttagttaattttgaaAACATGTACAACGTGGATGTTATAGTTTTATCCAAAGAAGAGCAAATGAAATCTGTATTAGATAGAAAGAAGGGTATTAGTTACTTGCATAGTCCTTACAAATGTGACCTATGCTTCAAAGGATTTATGGATGTGGATAATCTGACTAAACATTGTATGTCCCAACATGATTCTAGTCGAGGTTTGGTCGTTTGTGAGTTTTGCAAATTTCGATACAAGGACCAAAGGAGCCTCAACCAACATTTGAAGAAACACCGACTGAAGTTCGCTTGCCGTCAGTGCAAATATGTATCGAGGACTACTTTCAATGCGAAAGAACACCACAAGATGCACAGTGGGCAGAAGCATGAATGCAAGCAATGCGGAAAGAGTTATGAGAAGATGTCCTCGCATCTGTCACATATGAGGATTCATCACCCGTCGGACATGGTCTGGTGCGAATATTGCGGCGAGTCCTTTATAGGCGACTTCGGATTGAACGCCCACAAGAAACGGGCGCACCGCAACttaaAACTCCCACCTAACGCCGTCTGCGAGCTTTGTAATACGAATTTCATGAACATCGAGGCTTTAAACAATCACaaggacagacagacaaagggATTCTGTAATATATCCTGCGTCCACTGCGGGAGTGGATTCGATGCCCGGCTGGAACTAAGAGACCACCTTCTAGAAGTGCACAGAAGTAGGAAGAAGTATAGCTGTGAGAAGTGCTCAAAGACGTTCTCGAAGGAAACCTTATATAGCGCCCATTATAGAAGAATGCACGCCGATACATCTCAAATTGACAGGAGTGACAAAATGGCGAACTGGATATGCGAAGTCTGCGGGAAACGTATGCCGACAAAATGTCTGTTGGTGTATCATCAGAGGAACCACACCGGAGAGAGGCCCTATCAATGCGATGAATGCTCCAAAAGCTTCACGATGAGGAAGTTGCTGCACTCGCACATGCGTGTACATACAACGGCGAGGCCTTACTCTTGCAAAATTTGCCCGAAGACTTTCAAAGGACTCTCAACGCTAAGATCACATGAGAATGTACCtgatagatatttatatgaatatatatgttGGACATGTTTTGTCATAtttatgaaatcaataaaatttaaggaACAATGTATAAAGGCGAGAAATATGGTCTTTGGTATGGTTAGTGTTTCGAGAGAGTCACTAAACACCTCACACATGTTAAATTTCAAACCGAATCTAACTCAAAGCAAAGTAGTATTGACAAATGTAGGACCAGCTCTAGAAACCAATGAGGACTCGTTCTTTCCTATTATACAAGAAATTAAGTCAGAAGTACCAGACGAAGGCACAATTACAGATGTGAACGAAACAATTTgtgatgtaaaaataaattttaatgaaaacaacaAATTAAGTAATGAATATGTTGTGGAAGATAGTAAAGAATTTACTCAAGATGATGGAATTGATCCAGGGACTATTCTTTTCATGACTGATAAggaattgaaagaagaaattATTGTCAAAGAAGAGTGCTCATATTCAAGTCAGGAGGAGAGTGTAGATATCGCTCCTGTTGAGACAGGGATACCATCGGACGCCGATACACCTCTGAAGAAGGTAGAAGAAAGTAAAATTCCAAGTATAGTGGAGGAGACTGATACCAGCATACCAACAAGAAAACGTGCATTAAACGAAATCCCGCAGAAAACCAAGCGAATTAAACCCCACGAAACAACCATAGATAGATATCTCAAAGCTTATGCCGACTTGAATAATGTTTCTAagagtaaacaaaatattaaatcaacagCTATCTACTATGAACGAAATAAGGTTTCCACACAAACAAATAATCTACTAAAAGATAAGACACGAAACATCAATGTGATTGGACAGAATGACAAGACACTTACTTCTAAAGTTTGTTATAGTAATGATGAAAATGAAACCTTCAATCAATGCCTTCCGAATAAAATCGATGCGGTTGCTCCAAATACTTCATTAAAAAATGAGTTGtcatgtcagtacaaatgtgtcacaaaaagtcACTTAGATACACACCTTCGTAAGCACCCTGAAGAAAAGCCCTACACATGTGATTTATGTGGTGATAAATTTTCAAGAAACCATGATTTAaacatgcatataaaatataaacacacaaaggaaaagaacttctcatgtcacatgtgtcaatacaaatgtgttacaaaaaagtcattaaatatacatcttcgtaaacacactggagaAAAGCcatacaaatgtaatttatgtgatAATAAATTCTCcagaaaaaatgatttaaatatgcatataaaatataaacacacaaaggaaaagAAGTTCTCATGTCATGTGTGTCAATACAAATGTGTTACAAAAAATTCCTTAATTAtgcaccttcgtaaacacactggggaaAAGCCATACAAATGCGATTCTTGTGATGGTAAATTCTCAAGAAAAAATGGtttaaatatgcatataaagtataaacacagAGAGgaaaagaacttctcatgtcacatgtgtcatTACAGATGTGTAACAAAAATTTCCTTAAATGTACAttttcgtaaacacactggagaCAAGCCATTCAAGTGTGATTTATGTGATGATAAATTCTTAAGAAAAAGTGATTTAAAtgtgcatataaaatacaaacacacaaaggaaaagaacttctcatgtcatatgtgtcagtacaaatgtgttacaAAAAATTCCTTAAACATACatcttcgtaaacacactggagagaagCCATACACATGTGATTTGTGTGGTTATAAATCTTCAGTAAGACACACTTTAATCaaccatataaaatataaacacacaaaggaaaaaaacttctcatgtcacatgtgtcatTACAAAGGTTTTACAAAAGGCCGATTAAATTTACACCTTCGTAGACACATTGGAGAAAAGCCAtacatatgtaatttatgtgattataaatGTTTAGAAAATAGTAAATTAAGGTATCATATAAAGCGTAAACACATTGTAGAAATACCATATgtatgtgatttatgtgattctggATATTGTCGAAAAGATGagttaataaaacatataaatgatAAACACGCGACGTAA
- Protein Sequence
- MYTGAQDELLICRGCLSADGKPFDTNMKRSSLDYSVLIGIQIQEHDGLPHHFCYMCSALLRKFIRFRNKCLNSKHLLEDIQSNHVSKSKLKEFINSDSYCQYTNTQTYEYQPDKDNETEVLFENKDSIKTSIPNVKFKEEIDLSTVIQIKNEDTNFSQNSDLYDSDEQSLVNKYSTSSISNATNEIKSMSIKDNIESDSSDNQSLVTFKSNKPNTSKKRNTKLQLAVHTKKNLVRNFTLDNLKSECTKVSQKEEKRFESKENLVNFENMYNVDVIVLSKEEQMKSVLDRKKGISYLHSPYKCDLCFKGFMDVDNLTKHCMSQHDSSRGLVVCEFCKFRYKDQRSLNQHLKKHRLKFACRQCKYVSRTTFNAKEHHKMHSGQKHECKQCGKSYEKMSSHLSHMRIHHPSDMVWCEYCGESFIGDFGLNAHKKRAHRNLKLPPNAVCELCNTNFMNIEALNNHKDRQTKGFCNISCVHCGSGFDARLELRDHLLEVHRSRKKYSCEKCSKTFSKETLYSAHYRRMHADTSQIDRSDKMANWICEVCGKRMPTKCLLVYHQRNHTGERPYQCDECSKSFTMRKLLHSHMRVHTTARPYSCKICPKTFKGLSTLRSHENVPDRYLYEYICWTCFVIFMKSIKFKEQCIKARNMVFGMVSVSRESLNTSHMLNFKPNLTQSKVVLTNVGPALETNEDSFFPIIQEIKSEVPDEGTITDVNETICDVKINFNENNKLSNEYVVEDSKEFTQDDGIDPGTILFMTDKELKEEIIVKEECSYSSQEESVDIAPVETGIPSDADTPLKKVEESKIPSIVEETDTSIPTRKRALNEIPQKTKRIKPHETTIDRYLKAYADLNNVSKSKQNIKSTAIYYERNKVSTQTNNLLKDKTRNINVIGQNDKTLTSKVCYSNDENETFNQCLPNKIDAVAPNTSLKNELSCQYKCVTKSHLDTHLRKHPEEKPYTCDLCGDKFSRNHDLNMHIKYKHTKEKNFSCHMCQYKCVTKKSLNIHLRKHTGEKPYKCNLCDNKFSRKNDLNMHIKYKHTKEKKFSCHVCQYKCVTKNSLIMHLRKHTGEKPYKCDSCDGKFSRKNGLNMHIKYKHREEKNFSCHMCHYRCVTKISLNVHFRKHTGDKPFKCDLCDDKFLRKSDLNVHIKYKHTKEKNFSCHMCQYKCVTKNSLNIHLRKHTGEKPYTCDLCGYKSSVRHTLINHIKYKHTKEKNFSCHMCHYKGFTKGRLNLHLRRHIGEKPYICNLCDYKCLENSKLRYHIKRKHIVEIPYVCDLCDSGYCRKDELIKHINDKHAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -