Dpun006381.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022531.1:11750688-11764587[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00066 0.043 14.6 0.3 1 23 193 215 193 215 0.97 2 21 0.0029 0.19 12.6 0.2 2 19 245 262 244 265 0.93 3 21 0.00087 0.057 14.3 0.1 1 23 293 316 293 316 0.97 4 21 0.0031 0.2 12.5 0.9 2 19 333 350 332 353 0.93 5 21 0.036 2.3 9.2 1.0 1 23 364 387 364 387 0.95 6 21 0.00016 0.011 16.5 0.4 1 23 397 419 397 419 0.98 7 21 8.7e-05 0.0057 17.4 3.3 2 23 451 472 450 472 0.97 8 21 0.00064 0.042 14.7 1.2 2 23 513 535 513 535 0.96 9 21 0.003 0.2 12.6 0.7 1 23 585 608 585 608 0.97 10 21 0.001 0.067 14.0 0.2 1 23 668 690 668 690 0.97 11 21 0.0017 0.11 13.4 5.1 2 23 702 723 701 723 0.97 12 21 0.022 1.4 9.9 6.7 1 23 766 788 766 788 0.96 13 21 0.033 2.2 9.3 7.6 1 23 799 821 799 821 0.98 14 21 0.00023 0.015 16.1 0.6 1 23 829 851 829 851 0.97 15 21 4.8e-05 0.0031 18.2 0.2 2 23 871 893 870 893 0.97 16 21 0.018 1.2 10.1 1.4 1 23 911 933 911 933 0.93 17 21 0.067 4.4 8.3 3.6 1 23 940 962 940 962 0.97 18 21 0.00091 0.06 14.2 0.6 2 23 973 995 972 995 0.95 19 21 0.00092 0.06 14.2 0.3 2 23 1018 1039 1017 1039 0.95 20 21 1.4 92 4.2 0.8 2 20 1043 1061 1042 1062 0.92 21 21 2.2 1.4e+02 3.6 3.4 2 23 1082 1104 1081 1104 0.94
Sequence Information
- Coding Sequence
- ATGGCCTTTAAGTTGGGAAAATGCAGGCTTTGCCTCAAATTGGGCGACTTTTATTCAATTTTCACTGTCGACAATGCCGTGCAGCTCGCCGAAATGGTCATGGAATGTGCAAGAATTAAGGTGTATGAAGGTGATGGTCTGCCTGACAAAGTATGCTCTGATTGTATACAGAAATTGAGCAGTGCTTATATATTCAAACAGCAGTGTGAAAGATCTGATCAGGAGCTACGGAGAAACTATGTACCACCACCTgGTTTTAGTATAAGCCCTCCCCCACCGACCCGACAAAGCAGCGACTCGGCCTTTTCGACCCACACAGACAGCTCCaatttgacaaaaacaaattcatttgTTGAGGAGAAAAAAACACCCATTGCAAGGAACCGAAAAAGAAGTATTGAAAGCGATGTTTCCCAAAGTAGTCGCCAAGATGATAGACTTGGTAGCAAACGGGTCAATGAACTACGTCAAAAGAAACCAAGAAAAGAGACTTACCCTATGGACTCTGATTATGAAGATGCTGGATCGAATTACCAACCGGAAACTGACTCTGATGAGTCGTTTACCAAACAAACATTTGACTGCCTTGTTTGTCCAAAAAAATTCACGTCAGCAAAGAGTCGGGGTGCTCATATGAGAATTCATTCTCGCAAAGATAGCATGGGTACAGATGCAGTGGTTGACATACCCAAACAATCAATTGTGGATGCCCAAGATTCGGATAGCAAATTAAACTGCGAGAAGTGCggtaaaaactttaaattaaagatCATGTTGAACCGTCACAGTGCAGTTTGTGATGGTTCACCTTCAAAGAAAGAGTTGACGGTGCCTTTAGAGCCTATCGATCATATTTGGAAAACCAACTCTGATTATTTCGAATGTGAAATTTGTAAAGGCaattataaaagtattgaaGGTTTGGAGAAGCACATGAGAATTGTGCATGCTGCTGCACTCAAAGTTCCTGAAAAACAAGAAGTCAATGTTACAGTACCATGTAACTACTGCCAAAAACCATTTACTGATTATGACGAGTTTTGCAatcatttcataaattgtacAGAAAGGGTTGAATCAAACAACCCTCACATTTGCCCTATTTGCCAAAAAGCTATAGGTAAAAGGCAAAATTACTTTTCACACTTGAGGGGTAAGCATTTTCTCGTAAGAAATTGGCCACAGTATTTCGAGTGcaagaaatgtaaaaagaaATTGGCGACGCAAGAGTTATTGATTGTGCACTTGGCGACGCACGTGACGAAAGACGATGATAATGACGATAGCTTTGGTGATTCCAgGGACGACTCTGGCTATGGTCCGCCAGCGATCTCCAATCAACAGAGTCTGCAGTGTAAAATTTGCCATAAAGaattcatttacaaaaaatccCTTCAAACACATTTAGAGAAACATACTCCAGAAGAGATTGCAGCCCATGAGAACTCTCTGTTAAGTGATGCCAACAATACGGGTAATAATGACACTCTCAGAGCTTCAGATTCTGAGTCGAGTGGTGATGAGTACGAAAGCAACACTTGCGATATATGCGACAAAGATTTCGCATACAGACGCCTGTTAATACAACACAAGAAAAGGAAACACAACATGTCCTCAGGATTAAAACGGGCCAATATAACCTTGAAGGATTGTACAGCAAAATGCTTACTGTGTGATGTTGAGATGAAAGTGAGCTCTATAAACAAGCACAATCAAACTCATATTACAATGAGTATAAAACCAAGGAATGTATATACTTGTGGGGAATGTAAGGAACAATTTCAAAGTTGTTCAGTCCTAGCTAACCATATTAAGATAGTTCATAGactaaaacaatcAACAATACCAAATATGCCGACATCTTCTCAAGAAATGGAGATTAATCCGTCGGATTTTTGCGAAGTCGTTGTGACTAAACCGGAACCCCTGGACGAAAACCAGAGCCACAACGACTTCAGCGAGGTTCCAATAACTAACGCAGCAGCCGTTGATCTTAATGGTTTCACTTGCCCGCTCTGTGGGAAGAAAATGCCCACTCTCATATCACTGAAGCGGCACGTCAATTGGCACTCAAATGTAGGCAACAATATCACCAAGAAGATTGAGTGTTTCGTCTGTAAGGAGACATTCCGGTTTCAATGTCACTACAAAATTCACATGCGGGTACATTACAATGATCCTAATCTCGACCCTAAAATCCTCACTTGTTCAATTTGCAATCGTGAAAGTGGTCAAAATACTATTGTCGGTCATGAATTACCGAATACCGCTGACAAAAACTTCTTCGACGGTACCCATACATGCAACATGTGCGGTAAAATTTGCCACTCTGAAACATCACTCAAGCACCATATTATTTGGCATAACTCTAAAGGACTCCTCTATGGAGCACGACACGAGTGTCACATTTGCAAATTGCACTTCACTAACAAGAAGCGCATGGAAATACATGTCAGGAAGCATTATGAGGACGAAAACGGCCCATTCAAATGTACGATTTGCGGCGTCGGCTACACTGACGAAAATTACTTCAAGAGGCATGTAAAAGGCCACAATTTTGACCACCAATCCCATAAAGACAGAATTGCTAGATTACGGAAGGATAAAGTAAAATGTCCTATATGCCCCCGGTTCTTTGCAGATATGGTTAAACTTATTAGGCACTTGAGAAAAACGCATCCAGAAAGTAAAATGATAAAAGAAGACCCTGATGCACCTGAACCAATCTATTACTGCTGTAAGTTGTGCGCGAAAGTATTTTACGATCCTCGCAGATTGCAAAGCCACGAAGAAGCTCATTTAAGAAAGCCAGAGTTCTTTAAATGCAAGTTTTGTGGCAAGAAGACTATTTCTTTGAAGAATCACAGGGTACACATCAAAGCCCATTTAGTGACCAAACATATTGATAACCCATTGAAGTGTCCTCAATGCGATGAGAGGTTCATTCGTGGATACGACTTGCATTATCATCTTCGTGACGTTCATAATATCAAAGAAACATGGATAGCCGAACGTTCGGAGCGTATTTTAGATGGTCCACTGAAAGATTTACAATGTTCGATCTGCTTCAAAGTCTTAGCGAGTAAGGGTAACTTTGAACGACATTTAGACTATCATAATTCATTACGTTGCAACTATTGTTTTGAGTACTTCGGCACTCACCGGTTCCTCCAAGGCCATTTGGCATTCAGCTGTGAAAAGAAAAAGTTAGTTGGCAATACAGAAGTCCATGCAAAAAAGATCAAGTGTGAGATATGTTACAAAGCATTCCACCTGCAAGTAAAACTGGACTGTCATTTGCGCACTCAACATGATATAAAAGTGTCGAGAGAAGCTTCATCAGAACAGAAGGAATGTGTTTGCGATTACTGTTTAGGTTGTTTGAAAATGAATATGCTCTTAGCAATCATAAAATATACCACCGAACCATAG
- Protein Sequence
- MAFKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMECARIKVYEGDGLPDKVCSDCIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSISPPPPTRQSSDSAFSTHTDSSNLTKTNSFVEEKKTPIARNRKRSIESDVSQSSRQDDRLGSKRVNELRQKKPRKETYPMDSDYEDAGSNYQPETDSDESFTKQTFDCLVCPKKFTSAKSRGAHMRIHSRKDSMGTDAVVDIPKQSIVDAQDSDSKLNCEKCGKNFKLKIMLNRHSAVCDGSPSKKELTVPLEPIDHIWKTNSDYFECEICKGNYKSIEGLEKHMRIVHAAALKVPEKQEVNVTVPCNYCQKPFTDYDEFCNHFINCTERVESNNPHICPICQKAIGKRQNYFSHLRGKHFLVRNWPQYFECKKCKKKLATQELLIVHLATHVTKDDDNDDSFGDSRDDSGYGPPAISNQQSLQCKICHKEFIYKKSLQTHLEKHTPEEIAAHENSLLSDANNTGNNDTLRASDSESSGDEYESNTCDICDKDFAYRRLLIQHKKRKHNMSSGLKRANITLKDCTAKCLLCDVEMKVSSINKHNQTHITMSIKPRNVYTCGECKEQFQSCSVLANHIKIVHRLKQSTIPNMPTSSQEMEINPSDFCEVVVTKPEPLDENQSHNDFSEVPITNAAAVDLNGFTCPLCGKKMPTLISLKRHVNWHSNVGNNITKKIECFVCKETFRFQCHYKIHMRVHYNDPNLDPKILTCSICNRESGQNTIVGHELPNTADKNFFDGTHTCNMCGKICHSETSLKHHIIWHNSKGLLYGARHECHICKLHFTNKKRMEIHVRKHYEDENGPFKCTICGVGYTDENYFKRHVKGHNFDHQSHKDRIARLRKDKVKCPICPRFFADMVKLIRHLRKTHPESKMIKEDPDAPEPIYYCCKLCAKVFYDPRRLQSHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKAHLVTKHIDNPLKCPQCDERFIRGYDLHYHLRDVHNIKETWIAERSERILDGPLKDLQCSICFKVLASKGNFERHLDYHNSLRCNYCFEYFGTHRFLQGHLAFSCEKKKLVGNTEVHAKKIKCEICYKAFHLQVKLDCHLRTQHDIKVSREASSEQKECVCDYCLGCLKMNMLLAIIKYTTEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -