Basic Information

Insect: Dendrolimus punctatus
Gene Symbol: PRDM2
Assembly: GCA_012273795.1
Location: CM022556.1:8780178-8815024[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0036 0.23 12.3 0.4 2 23 46 67 45 67 0.95

2 16 0.005 0.32 11.9 1.1 1 23 73 96 73 96 0.96

3 16 0.00032 0.021 15.6 3.6 1 23 102 124 102 124 0.99

4 16 1.8e-05 0.0012 19.6 2.5 1 23 130 152 130 152 0.98

5 16 0.003 0.2 12.6 7.4 1 23 158 180 158 180 0.98

6 16 1.6e-05 0.0011 19.7 1.7 1 23 187 210 187 210 0.93

7 16 1.2e-05 0.00079 20.1 1.0 1 23 218 241 218 241 0.98

8 16 0.00026 0.017 15.9 0.1 2 23 248 269 247 269 0.97

9 16 0.0002 0.013 16.3 0.3 1 23 275 299 275 299 0.96

10 16 0.0015 0.097 13.5 0.5 2 23 306 327 305 327 0.95

11 16 0.00078 0.051 14.4 1.8 2 23 335 357 334 357 0.96

12 16 0.076 5 8.2 0.6 1 23 364 387 364 387 0.96

13 16 0.002 0.13 13.1 1.8 2 23 394 416 393 416 0.93

14 16 0.16 10 7.2 5.1 1 19 633 651 633 655 0.93

15 16 0.04 2.6 9.0 1.0 2 23 666 687 665 687 0.96

16 16 0.0015 0.096 13.6 2.7 1 23 808 830 808 830 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0036	0.23	12.3	0.4	2	23	46	67	45	67	0.95
2	16	0.005	0.32	11.9	1.1	1	23	73	96	73	96	0.96
3	16	0.00032	0.021	15.6	3.6	1	23	102	124	102	124	0.99
4	16	1.8e-05	0.0012	19.6	2.5	1	23	130	152	130	152	0.98
5	16	0.003	0.2	12.6	7.4	1	23	158	180	158	180	0.98
6	16	1.6e-05	0.0011	19.7	1.7	1	23	187	210	187	210	0.93
7	16	1.2e-05	0.00079	20.1	1.0	1	23	218	241	218	241	0.98
8	16	0.00026	0.017	15.9	0.1	2	23	248	269	247	269	0.97
9	16	0.0002	0.013	16.3	0.3	1	23	275	299	275	299	0.96
10	16	0.0015	0.097	13.5	0.5	2	23	306	327	305	327	0.95
11	16	0.00078	0.051	14.4	1.8	2	23	335	357	334	357	0.96
12	16	0.076	5	8.2	0.6	1	23	364	387	364	387	0.96
13	16	0.002	0.13	13.1	1.8	2	23	394	416	393	416	0.93
14	16	0.16	10	7.2	5.1	1	19	633	651	633	655	0.93
15	16	0.04	2.6	9.0	1.0	2	23	666	687	665	687	0.96
16	16	0.0015	0.096	13.6	2.7	1	23	808	830	808	830	0.98

Sequence Information

Coding Sequence: ATGGAGGAGGAAGCTGATGAAAATGATATACATGACCTACCATCTCAAGAGCTACTTCGCATGAGTCTCAAAACGcctatgacaaaaataaagaagGTCAAAATGAAGAAATATTCACCGAAACTTGGGCTGCTTAGATGCGACGTGTGTAATAAAatatgcAATGACAAAGCAGCTCTGGTGTCCCATAAGGCGGTCCATATCCAAACGGCGGAGTTTGCATGCTCAAAATGTCCATACAAGGGCAAAACAAGGAAATATCTAGCGCGTCACCTGTCTAAAGTGCACACAGAACCAACCAAATATAAATGTGATGATTGTGGGaagaaatttcattttttgaacAGACTAGAATCGCATCGGAGGGTACATACAGGTGAAAAGCCGTATGAATGTAAGCATTGTGAGAAGACGTTCAGCGCAAGGTATTCTCTAAACACGCATCTACTTGTACATAGtgATGAAAAACCTTTCAAGTGCTCCTTCTGCGAGTACGCCTGCCGTGATAGTTCGACGCTGAGAAAACACCAACATCGTCACATGGGCCTCGAGACGGTGTACCAATGTAAGAAATGTGATATGAgTTTCAAAAAGAAGTATACACTGAAGAATCACGTGGCTGAAGCTCATTTGAATATGAAATTGAAGCGGTACAAATGCGACAGGTGCGAGAAGGACTTCAAAAGGAAAGCACTTTTGACACTCCATATCAAGTCCATACACGACAAGCTGATGAGGAGCGAGTGCAAGATATGCGGCGTGGTCATCAACAACAAGTACAATATGACGCGCCATATCCTCATTCACACGGAGGCCAGGCCCTACAAGTGCGAGTTCGACGGCTGCGACAAGAGGTTCAAGGACCCGTCATCGGTGGCCAAGCACAACATAATCCATTACCCGTCGAAGCACATGCCCTGCAAGATATGCGGGAAGCTGTTCACGAGGGTCAGGAGGCTGGAGTACCACATGACTCTCCACAAGGGCAGGAAGAGGACCGTCAGGTGCGACGAGTGCGGCGTCTGTTTCTACAACGAGGTGTATTTGAAGCTGCATTACAAGAAGAAACACGACAAAAAGAGAAAGAGATACAAGTGCGATCTGTGCGATTTCTTCACAAGCAACAAGCCTTCCATTGTGATGCATCTGAAGTATGGACACGCGAAGGACAATGATGTCGAATGTAAAATATGCAATATTAGGTTTAAGAAGCAAGAGTATCTGAAAATGCATTTCACCAGAAAACACAAGACGAGATACAAACCGATGAAGAGACAAAAGAAGAAACCAAAAAAGccccaaataataataaaagaagaaccaGAAGATTCTGTCGACGAAACGGACATTATGGAACTTCTCACGAACGTTAAGCAAGAACCAGATGAGCCTGGAGCCGAAGAACGACGCACAGAAGACGCGGAAGACGCCGACGGCATAATGTACTCGGACGCGGTCTTCTCCGAAGATATAGCGGAGAGCTACATCAAGCACAACAGCGAGAAGCTGACGAAGCTTCCCGAAGACGTCTTCGACACCTTCTTCATTGAGCACGTCTACAAGCGATACTTGGAGAGGGAAGAAAAACCAACGATGACAGACAAAGAGGAAGTACAGCGAGGCATAAGGCGTTACAAGGAGCTGTTGAGCGAAATCATCGGCGGGACAGAGGCGGACATACCGGAGTCAACGGGTGCGAGAGGGACGGAAGATGCGCCTATACAAAAGGGCAAAGTGAAATTGAAGAAACGCAAAGCGAAGGAAGTGAAGCCTAAAAGAGGCGGGAAACCCTTGAAGGCTTCCGGTAATAAGGACGAACCGGATACAGAGAGGACAGGTGAAATTCGTGAAAATGGTCAAGAAACGAGTGAAATCAATAGAATTACGTTCAACATGCACCAATGTTACGTCTGTTTtcagGTGTTCGAAACGAAAAAACTACTGACGAAACACTGTGCGCAACATTTCGACGTGTGCAGCGAGACGCAATTGAAAAAGTGTCCGTTGTGCACGTTCGTCACGAAAAGCTCTAATTTCGCGTTGCACATGCGCAAAGTGCATAAAATGAGTATATCGTATAACTATGGGCAAATCCAAGAAAATGTTAACGGGACTAAATATAGTTTCAAAGGGAACAACGGCTATGACATAGAAATAATACCTAGTATAAAAAATTTGAACAAAAGGGAATGTATGAAACTCGATAAAAGAAACCgctatataaaagataaaagtaTAACCAAAACAAAGTTAGTTAAGTTGGGGAACGAATGGGTGGTACAGAAAGACAGTGTACCCACGAAAGAGTTCGTCAAGCCGGATTTGAAAGAATTCAAGTCAGATATGAAAGAATGCGCTAATTATCTGGAAGTTCTGAGACAAAAGTATAGAGAATATAAAAGTATTGGCCAAAGAATGCTCTTCCCTTGTCAATTTTGTGATAAACCTTGTCAGAGTTTTAGCGCCTTGAAATTGCATTTGAGGAAGCACGAGAAGAATCCCAAACCATTTAAAAAGAAAGTATGGaagcataaattaaataatttagccGCTATAGATCATTCAAATAACGCACCTAAGAGAAATGATTTTAGTATATCCAAtgaaagcaataatttaaatataactgcTAAAGTAAATGATGTATTAATTGAtggtaaatgtttaaaaattatcttaaaagATTGCATGAAGAAAAATTTTACAACACAAAAGAACACAGAACTGAAAGCAAAGAATTCAATACATTTGCAAAAGAATCCAGAACCAGTGGTTCCAAATTCTTCACAAAAGTATCAAGAACCAGTAGTTCAGAATTCTTTACAAAAGAATCCAGAACCAGTTCAAAAttctttagaaaataatacagAACCAGTGGTTCCAAATTCTTTACCAAAGAATACAGAAGCAGTAGTTCCGAATTATTTACAAAAGAGTACGAAGCGTCCAAGATCGAAAGAAACTAGAGATCCTTTGGCAGATCCCAAACCCGTTACATCGAAACATAAATGTGACAAAGCATTGATAGAGTtctacaaaaacaatatcaagGGTAGCGATATAGAATTTtggcaatttttgaaaattttcaacaaaatgaCTCGAGAAAATGTCGAAGACTTTGAAGATCTAGAAAGCAGATACGATTTTGGTATGCACATAGATAATAGACTTAAGAGCAACAATGAAAATAGTCAAGAAAATTCAACAAATGAAACTGTATAA
Protein Sequence: MEEEADENDIHDLPSQELLRMSLKTPMTKIKKVKMKKYSPKLGLLRCDVCNKICNDKAALVSHKAVHIQTAEFACSKCPYKGKTRKYLARHLSKVHTEPTKYKCDDCGKKFHFLNRLESHRRVHTGEKPYECKHCEKTFSARYSLNTHLLVHSDEKPFKCSFCEYACRDSSTLRKHQHRHMGLETVYQCKKCDMSFKKKYTLKNHVAEAHLNMKLKRYKCDRCEKDFKRKALLTLHIKSIHDKLMRSECKICGVVINNKYNMTRHILIHTEARPYKCEFDGCDKRFKDPSSVAKHNIIHYPSKHMPCKICGKLFTRVRRLEYHMTLHKGRKRTVRCDECGVCFYNEVYLKLHYKKKHDKKRKRYKCDLCDFFTSNKPSIVMHLKYGHAKDNDVECKICNIRFKKQEYLKMHFTRKHKTRYKPMKRQKKKPKKPQIIIKEEPEDSVDETDIMELLTNVKQEPDEPGAEERRTEDAEDADGIMYSDAVFSEDIAESYIKHNSEKLTKLPEDVFDTFFIEHVYKRYLEREEKPTMTDKEEVQRGIRRYKELLSEIIGGTEADIPESTGARGTEDAPIQKGKVKLKKRKAKEVKPKRGGKPLKASGNKDEPDTERTGEIRENGQETSEINRITFNMHQCYVCFQVFETKKLLTKHCAQHFDVCSETQLKKCPLCTFVTKSSNFALHMRKVHKMSISYNYGQIQENVNGTKYSFKGNNGYDIEIIPSIKNLNKRECMKLDKRNRYIKDKSITKTKLVKLGNEWVVQKDSVPTKEFVKPDLKEFKSDMKECANYLEVLRQKYREYKSIGQRMLFPCQFCDKPCQSFSALKLHLRKHEKNPKPFKKKVWKHKLNNLAAIDHSNNAPKRNDFSISNESNNLNITAKVNDVLIDGKCLKIILKDCMKKNFTTQKNTELKAKNSIHLQKNPEPVVPNSSQKYQEPVVQNSLQKNPEPVQNSLENNTEPVVPNSLPKNTEAVVPNYLQKSTKRPRSKETRDPLADPKPVTSKHKCDKALIEFYKNNIKGSDIEFWQFLKIFNKMTRENVEDFEDLESRYDFGMHIDNRLKSNNENSQENSTNETV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00432520;
90% Identity: iTF_00432520;
80% Identity: -