Dpun019653.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dendrolimus punctatus
Gene Symbol
-
Assembly
GCA_012273795.1
Location
CM022548.1:12203189-12212342[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.032 2.1 9.3 1.8 1 23 395 418 395 418 0.94
2 28 0.029 1.9 9.5 5.6 1 23 424 446 424 446 0.98
3 28 0.00019 0.012 16.4 4.9 1 23 480 502 480 502 0.98
4 28 5.4e-05 0.0035 18.1 0.4 1 23 508 531 508 531 0.95
5 28 0.0073 0.48 11.4 3.8 1 23 537 559 537 559 0.98
6 28 0.61 40 5.3 4.7 1 23 565 588 565 588 0.95
7 28 0.0068 0.44 11.5 2.3 1 23 594 616 594 616 0.98
8 28 0.00076 0.05 14.4 1.8 1 23 622 645 622 645 0.95
9 28 0.0054 0.36 11.8 7.0 1 23 651 673 651 673 0.99
10 28 0.024 1.6 9.7 2.6 1 23 679 702 679 702 0.97
11 28 0.0073 0.48 11.3 6.3 1 23 708 730 708 730 0.99
12 28 0.027 1.8 9.6 2.2 1 23 736 759 736 759 0.98
13 28 2.7 1.7e+02 3.3 6.0 1 23 765 787 765 787 0.97
14 28 0.00061 0.04 14.7 0.5 1 23 793 816 793 816 0.96
15 28 1.3e-05 0.00085 20.0 4.0 1 23 822 844 822 844 0.98
16 28 0.00065 0.043 14.7 3.3 1 23 850 873 850 873 0.96
17 28 0.0027 0.18 12.7 5.8 1 23 878 900 878 900 0.98
18 28 0.17 11 7.1 4.2 1 23 906 929 906 929 0.95
19 28 0.075 4.9 8.2 8.5 1 23 935 957 935 957 0.97
20 28 0.00013 0.0086 16.8 4.8 1 23 963 986 963 986 0.97
21 28 8.6e-05 0.0056 17.4 2.5 1 23 992 1014 992 1014 0.96
22 28 0.47 31 5.7 4.8 1 23 1020 1043 1020 1043 0.95
23 28 0.09 5.9 7.9 4.4 2 23 1049 1070 1048 1070 0.96
24 28 0.015 0.97 10.4 2.5 1 23 1076 1099 1076 1099 0.96
25 28 0.37 24 6.0 7.3 1 23 1105 1127 1105 1127 0.98
26 28 0.06 3.9 8.5 5.7 1 21 1133 1153 1133 1156 0.95
27 28 0.0076 0.5 11.3 4.5 1 23 1162 1184 1162 1184 0.98
28 28 0.00045 0.029 15.2 2.2 1 23 1190 1213 1190 1213 0.97

Sequence Information

Coding Sequence
atgagtgtaagaaatgaaataaatttttgcGGCACATGCTTAAACACTGGAGTGAAATTTCGAAAACTTGATCAGAATAGTGCTAAAATTTTAAAGGGATTCTTGGGTCCAGAGgtcTTTCgtgatttttcatataaaaacatatgTATAACATGTTATGCATTACTTGTGAAATCAATGAGATTCAAAAGACAATGTTTGGAAGCAAGAAGTTTGTATTTGAGTATGGTTCATgTTTCAGAAGAATTACTGAACATGTTGTATAAATTAAACTTCAAACCAAGTCTCAGTCAAACCCAAGTTACACTTCTAAATATTGATGCACCTCTGTCTCTTCTTGAAAGCAATGATCGAGTCCCTCCTCCAATAGAAGAAGTAATCATAGATTTTAAGGAAGAGATAGTAGAAAACGACAAACCAAATCCAACACAAATGCATGTTAAATTTCCAAATTTAGATGCATCTCCATCTTTTCTTGAAAGCATTGATCCAGTTCCTCTTTCAATAGAAGAGTTAAAAGAAGAATTTAGTGAAGATACAATAGGAAATGAATccatttttgttgaaaaaatcaatttgatacctaataatgatttaaagcCAGAAAACAATGTATCGAGGGACTTAAATGTTGTTGAAAGTGATAAGGTAGTCATTGAAAAAGTTGAATGTTCACCAGAAACTGTTCTGATTCCCACAGAGAAGGAAtcaaatgaagaaatttatCTCAAAGAAGGTGTACCACTGAGAAAACGCACGTTAAACGAAGGATTGCAAGAAAAGCGAATTAAGCTAAACGAAACATCTACAGACAGAACATCTTTTACTCACACTTTGAAATTATGGCCAAAGAATAATTGCGAAGCATCAAGCACAAGCTTTTCTAAAACATTATTCAAGGCCTCCTATTTAAACATTTCTAATAGCAAAGAAATTATAAAGCCAATAGTTACTAAGATTTCACCAAACCATGAAATTCAAAACAACAAGACATTTAATTCTAATATCCCTTATAATAATGCAAAAATTGAAATTGATAAACACCATCTGAAGAGTGCCGATGCGGTTGCTTCAAGTACTTTATTAGAGAGAATTGATGAAggaaataaattaagtatttgTAATAGAAAGGGACCCAGCTTTAATGTACATCTTCCTGGACAACACACTAGGGAGAAGCCATATTTATGTGAtttttgtgattatagatgtcCAGCTGTAAGTCAATTGAAAAGACATATACAGTACAGACATACAAAGGAAAAGAATTTCTCGTGTCATTTGTGTCAGTACAAATCTGTTACTAAGTTTGGCTTAACTCGACACTTTCGTAAACACACTCAGGAAAAACCGTACAAATGTGATTTCTGTGATTATAGATCCTTAACAAGTAGCTGTTTAAAACACCATATGAAATGTAAACACACCAAAGGGGACTTCTCATGTCATTTATGCgagtacaaatgtgtcacaaaaagtgATTTAAATGTACACATTCGTAAGCACACTAGGACTGAACTGTATATTTGTGATGTGTGTAATCTTAGGTTTGAACGTAAAGATGATTTGAaaatacatatactatataaacatacaaaagaaaaattattcTCATGTCACATATGTCAGTACAAAGGTACTTCCAAAAACAGATTAAATGTACATCTTCGTAAACATAGTGTAGAAAAACTGTACATATGTGATTCATGTGATCTTAGATTTAAATGTAAAAGATATTTAAGAGAGCATATTAAGTTTAAGCATACACCAGAAATGCTCttctcatgtcatatatgtcagtaCAAAGGTGCTACCAAGAACAGATTAGAggtacaccttcgtaaacataCTGGAGAAAAACCCTATACATGTGATTTGTGTAATCATACATCGGCATctaaagattatttaaaaagacATATAATCCTTAAGCACACGCCTGAAATGCTCTTCACTTGTCAtatatgtcagtacaaatgtgctACCAAAAACAGATTAAAagtacaccttcgtaaacataCTGGAGAAAAACCGTACACATGTAATTTATGCAATCATAGAATGGCATCTGaagactatttaaaaaaacatattaagctTAAACATAGGCCAGATATGCTCTTCACTTGTCAtatatgtcagtacaaatgtgctAGCAATAACAGATTAAAggtacaccttcgtaaacataCTGGAGAAAAACCGTACACATGTAATTTATGCAATCATAGAATGGCATCTGAagactatttaaaaatacatataaagcgAAAGCATACACCAGGAAAGCTCTTCTCTTGTGATCTATGTCAGTATACATGTGATTCAGAGAAGCGATTTAATGTACACCTTCATAAACATACTGGAGAAAAATCATATGTATGTGATTTATGTGCACAAAGATTTGCAAATAAACGATATTTAGTAAAACATATAAACcttaaacatataaaaacaaataacttttCTTGTCATATATGTCAGTACAAATTTGTCACAAATAGCAAATTAAATGTACACCTTCGTAAGCACACTAGAGAGGAGTTGTACATGtgtgatttgtgtgattataCATGTGCACGTAAAAGACTTTTAAAAAGCCATATGCTGTATAAACACTTACAGAAGAACTTCTCCTGTCATATATGCGAGTACAAATGTGTTAgtaagaataaattaaatgtacaccttcgtaaacataCTGGAGAAAAACCGTACATATGTGATTCGTGTGGTCATACATTTGCATGTAATGAATATTTAACACAACATATTAAGTTTAAACATACAACAGAAAAGAAATTCTCTTGTCAcatatgtcagtacaaatgtaaaaggAAGAGTGCCTTAGATATACATTTCCATACACACACTGGTGAGAAGCAatacaaatgtgatttatgtaattttagttgTTCATCTAAAAGCACTTTAGAAAGACATAtcaagtataaacacacaaaggagaaaAAGTTCTTATGTCATATTTGTGATTACAGATGTGTTACAAACGGCAACTTAATTTCACATTTACGCGTACACACTGGGGAGAAATTGTATTTATGTGATTTCTGTAATCATAGATTTGTATGTAAGGAATATTTagcaaaacatataaaaattaaacatacagAAAAGAAATTGTCttgtcacatgtgtcagtatAAATGTGTTGCAAAGAGCGAATTTAATGTACATCTACAAAAACATATTGGGGACACGCCATACATATGTTATGTATGTGATTATAGATCAGCAAGTGAAgagcatttaaaaatacatataaagcaTAAACATACGGGAAAAACGAACTTCTCGTGTCACTTATGTCCATACAAATGTGTTGCAAAGTGCAAGTTAAACATACATCTTCGTAAACATACTGGGGAAAAACCGTACATGTGTGATTTTTGTGGTTATAGATGTACACAAAAAGATAGATTAATTAACCATATAAAGTGTAAACATTCAAAGGAGAAGAAGTTCTCATGTCACTTATGCCcgtacaaatgtgtcacaaagtTCACCTTAATTGCACACTTTAGAGTACACACCGGGGAAAAACCGTATATATGTGATgaatgtgattatagatgtgcacttaagcaaaatttaacaaaacataTAATGCGTAAACACGTACGGGCTTCTTCAtag
Protein Sequence
MSVRNEINFCGTCLNTGVKFRKLDQNSAKILKGFLGPEVFRDFSYKNICITCYALLVKSMRFKRQCLEARSLYLSMVHVSEELLNMLYKLNFKPSLSQTQVTLLNIDAPLSLLESNDRVPPPIEEVIIDFKEEIVENDKPNPTQMHVKFPNLDASPSFLESIDPVPLSIEELKEEFSEDTIGNESIFVEKINLIPNNDLKPENNVSRDLNVVESDKVVIEKVECSPETVLIPTEKESNEEIYLKEGVPLRKRTLNEGLQEKRIKLNETSTDRTSFTHTLKLWPKNNCEASSTSFSKTLFKASYLNISNSKEIIKPIVTKISPNHEIQNNKTFNSNIPYNNAKIEIDKHHLKSADAVASSTLLERIDEGNKLSICNRKGPSFNVHLPGQHTREKPYLCDFCDYRCPAVSQLKRHIQYRHTKEKNFSCHLCQYKSVTKFGLTRHFRKHTQEKPYKCDFCDYRSLTSSCLKHHMKCKHTKGDFSCHLCEYKCVTKSDLNVHIRKHTRTELYICDVCNLRFERKDDLKIHILYKHTKEKLFSCHICQYKGTSKNRLNVHLRKHSVEKLYICDSCDLRFKCKRYLREHIKFKHTPEMLFSCHICQYKGATKNRLEVHLRKHTGEKPYTCDLCNHTSASKDYLKRHIILKHTPEMLFTCHICQYKCATKNRLKVHLRKHTGEKPYTCNLCNHRMASEDYLKKHIKLKHRPDMLFTCHICQYKCASNNRLKVHLRKHTGEKPYTCNLCNHRMASEDYLKIHIKRKHTPGKLFSCDLCQYTCDSEKRFNVHLHKHTGEKSYVCDLCAQRFANKRYLVKHINLKHIKTNNFSCHICQYKFVTNSKLNVHLRKHTREELYMCDLCDYTCARKRLLKSHMLYKHLQKNFSCHICEYKCVSKNKLNVHLRKHTGEKPYICDSCGHTFACNEYLTQHIKFKHTTEKKFSCHICQYKCKRKSALDIHFHTHTGEKQYKCDLCNFSCSSKSTLERHIKYKHTKEKKFLCHICDYRCVTNGNLISHLRVHTGEKLYLCDFCNHRFVCKEYLAKHIKIKHTEKKLSCHMCQYKCVAKSEFNVHLQKHIGDTPYICYVCDYRSASEEHLKIHIKHKHTGKTNFSCHLCPYKCVAKCKLNIHLRKHTGEKPYMCDFCGYRCTQKDRLINHIKCKHSKEKKFSCHLCPYKCVTKFTLIAHFRVHTGEKPYICDECDYRCALKQNLTKHIMRKHVRASS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-