Dpun011623.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022556.1:6374055-6376418[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.5e-06 0.00023 21.8 4.0 1 23 10 33 10 33 0.95 2 20 0.00067 0.044 14.6 0.3 2 23 39 61 38 61 0.95 3 20 3.2e-05 0.0021 18.8 0.3 2 23 70 92 70 92 0.97 4 20 1.3e-05 0.00082 20.0 2.0 2 23 101 123 100 123 0.95 5 20 3.2e-05 0.0021 18.8 0.2 2 23 131 153 131 153 0.95 6 20 5.9e-06 0.00039 21.1 1.4 2 23 161 183 160 183 0.95 7 20 1.8e-07 1.2e-05 25.9 1.3 1 23 189 212 189 212 0.98 8 20 0.00034 0.022 15.6 1.5 2 23 221 243 220 243 0.95 9 20 0.00055 0.036 14.9 0.7 1 23 262 285 262 285 0.95 10 20 6.1e-06 0.0004 21.0 0.9 1 23 309 332 309 332 0.97 11 20 0.0077 0.5 11.3 0.8 2 23 369 391 369 391 0.95 12 20 0.003 0.19 12.6 5.5 1 23 415 438 415 438 0.97 13 20 9.4e-06 0.00061 20.5 0.3 2 23 445 467 444 467 0.96 14 20 8.1e-05 0.0053 17.5 2.2 2 23 474 496 473 496 0.94 15 20 0.0046 0.3 12.0 2.5 1 23 502 525 502 525 0.97 16 20 0.19 13 6.9 7.1 2 23 533 555 533 555 0.95 17 20 3.9e-05 0.0026 18.5 0.9 1 23 562 585 562 585 0.97 18 20 0.15 9.6 7.3 1.0 1 23 592 615 592 615 0.90 19 20 0.0023 0.15 12.9 3.3 5 23 632 651 629 651 0.92 20 20 0.94 61 4.7 0.1 3 17 673 687 672 688 0.92
Sequence Information
- Coding Sequence
- ATGTCAATATACCAACAGCTCTCTGAATTCGTCTGCGACTACTGCAGTAGGTCTTTTACAAGGAAATATAACCTTCAAACTCATATCGAAAATTGTCATATTAATTCTTCATGCTACTGCGAGATTTGTGACCAGCGTTTTGGAAGTCCAGCTGGCCTACAGCTTCATCTATCTCGAGGTCACAACAGAAATGGTCAATCTTTTCCCGAATGCGACCTCTGCGGGCGCATTTTCACTAGAAAACAGAATATAATGTCTCATATGATTACAGTACATTTACAAGGTGTTGGACCAGATATTCGTTGTAATTTGTGCTATAAAACTTTCACTACAGAACGTAATTTAAAACGCCATTTAAATCAATTACACAATCCTCATGTTGAATATCCAACTTGCGATGATTGCAACAAGGTATTTAAAGGGAAACAGTCATTGATTGCGCATATACAAGCAACACACAGCTCTGAAAAAGGAGCAATTATGTGTCACTTGTGCGAAAAAGTATATACGAATAACAGAAATTTGAAAAGACATATTGAAATGTTGCATGGTGATAAAGAAGAGTACAAATGTGATGTTTGCCCGAAAGTTTATACGTCAAATCAAAGTCTTAAAAGGCACTTACGTACTACTCATTATGCTGAGTCTCAGGAGTTTGTAAGATGTCATTATTGTGATAAAACGTTTATGGGACAGGACAACGTGGAGTCGCATGTAAAATACTttcataaaacaaaagtaatttaCAGTGACTATATTGAAATTGACACAAGAACCAGATACTTCCTTTGCAAGAAGTGCTATAAAAGTTTTGAAGGAGAACCATTATTACGGCAACATATAAAAACAGAGCACTCATTCAAAACGTTTTATAAGTATTGCAAAAGAACTTTGCTTAAGCAAGTGTTAAACAAACAGCGTTTTTATAAATGCGAATATTGTGACGTCACTTTTGCAACCGTTTATAAATTGAAAGATCATATGAGATTAAACCATGATGTTGAATATAGTTTATCATCTTGCAATGTGTGTTTCAGGAAGTTCTATTGTAAAGAAACAATCAGTGATCATAAAAAAGTGTGTATACCGCCACCTAACGTAAACTCTTGCAGTTACTGCGATAAACTTTTCACAGATATCTCAAGTTTAGAGTTTCATACACGAATTTTTCACCCTCAAGCACAAATAGCTGATTCTAACATAACATCAACTAACATGGAAGATAGTTTTGACCAAAACTCCTTCAAATGCGAGCATTGTGATAGGATTTACTACAGTGATCGCTCCCTGAAACATCACATAAAGTTGAAACATACGTCAGAAGAAGCTGTAGAATGCGAAGACTGCGGCAAGATTTGTTCAAATAAATACTACTTGGCGTCGCACattaaaatagttcataataACGATTCATTGTCGCAGTGCAATTATTGCGAGAAACAATTCAGATCTAAAAGAAACATACGTCGACATATAGAATATACACATCTAGGAATGCAACGTTACAAGTGCATTGAATGCGAAACCCTTTTCAAAGAGAAACGTAGCTTACGTAAGCATCTAAGGACAAAGCATCCAAACTCAACATCGTTCCCACAATGTCATATATGCCACAAACGGTTCGAATCAGCAAAATCTTGCAAGATACATCTGAAACTGCTGCATTCATTCAACATGAATACATACCCTTGTCACTTGTGTTCAGTTTCTTTCAGCTCTAAAGAGGCTCTGAACATCCATCTACAAAGCAAACATTTAGCAGAAGATGAGATATACAAATGTGAGGAATGTAACGTAGTTTTGAGAGGACAGGAGAAATTCGAGCAGCATAATGATGTATGCCATGTGAGGTCATATCCTAATACGAAGCTGAAAATTCTACCTCGCTGCATTTTATGTACAAAAGATTTTAGCACGCGTAAAACTTTAAAACGAcatataaagaagtttcacgaAGGTTTTGAGGTGGATGCATTAGCGAATTTTGGCTCTCGACGTCGAGTATTCAACGTTGACTGCGAAGATTGTCTTAAGAACTTCAACGATGAATACTACTTAAATATCTTCCAAAAGTTGAGGCATATACGCGACTCTATTATATTCAAATGTGAGACATGTAAATCCTCCTACAATTCCTTAGAATATGCAATTCAAAGATATAAGATAGCCAATAGTGATGGTTTTAAGAGTAAAATGATATTAAGCGAACTCTGCACGACTGAGATGAGTGATGATGAAGAAGCTTCATATTCGGGATTTGGATCTTTGCATGAGGTTATGGAACCGGAAAGTACGACTAAGGATATAAAATTTGAGCTAGCAGATGATTTGCTTGAAATAAAGACAGAACCGGTGTGGGCTTAA
- Protein Sequence
- MSIYQQLSEFVCDYCSRSFTRKYNLQTHIENCHINSSCYCEICDQRFGSPAGLQLHLSRGHNRNGQSFPECDLCGRIFTRKQNIMSHMITVHLQGVGPDIRCNLCYKTFTTERNLKRHLNQLHNPHVEYPTCDDCNKVFKGKQSLIAHIQATHSSEKGAIMCHLCEKVYTNNRNLKRHIEMLHGDKEEYKCDVCPKVYTSNQSLKRHLRTTHYAESQEFVRCHYCDKTFMGQDNVESHVKYFHKTKVIYSDYIEIDTRTRYFLCKKCYKSFEGEPLLRQHIKTEHSFKTFYKYCKRTLLKQVLNKQRFYKCEYCDVTFATVYKLKDHMRLNHDVEYSLSSCNVCFRKFYCKETISDHKKVCIPPPNVNSCSYCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNMEDSFDQNSFKCEHCDRIYYSDRSLKHHIKLKHTSEEAVECEDCGKICSNKYYLASHIKIVHNNDSLSQCNYCEKQFRSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHLRTKHPNSTSFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSKEALNIHLQSKHLAEDEIYKCEECNVVLRGQEKFEQHNDVCHVRSYPNTKLKILPRCILCTKDFSTRKTLKRHIKKFHEGFEVDALANFGSRRRVFNVDCEDCLKNFNDEYYLNIFQKLRHIRDSIIFKCETCKSSYNSLEYAIQRYKIANSDGFKSKMILSELCTTEMSDDEEASYSGFGSLHEVMEPESTTKDIKFELADDLLEIKTEPVWA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00432458;
- 90% Identity
- iTF_00432458;
- 80% Identity
- -