Dpun022004.1
Basic Information
- Insect
- Dendrolimus punctatus
- Gene Symbol
- -
- Assembly
- GCA_012273795.1
- Location
- CM022538.1:9170594-9171399[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-09 2.1e-06 27.7 0.0 1 36 8 44 8 50 0.92 2 2 7.1 4.8e+03 -2.3 0.0 2 10 75 83 74 84 0.80
Sequence Information
- Coding Sequence
- ATGCCAAAGATACCCCAGTATACAAAAGACACCCTTGACGAGGcactagaaaaaataaatgataaaacaatGTCTTTGCAAGCGGTtgcaaagaaatataatatccCTAGGGCAACTTTACAGCTCAACCTAAAAGATCCTACTTCTAGATCTCAATTTGGGCCAACACCATATTTAACAGAGGAAGAAGAAGACACTATCGAAGACTGGAATTACTTAACCAGTGAAAACCTGTTAGAGGCAATTCGTGATCCACAACGTGTTTTTAACGCTGATGAGACAGGATTTAAGCTTTGTCCTTCTACTGGTCGGGTGCTTGCCGCTAAAGGAGATAAGAATGTTTATGCCGTGGAACAAGGAAACTCCAAGGAAAATGTAACGgtcttatttacattttttgctGATGGCAAGATATGTCCTCCTCTGATGGTATTTCCGTACAAAAGACTGCCGGAAAAAATTGCGACATCGGTGCCGCCTGAATGGGGTATCGGACGCAGTGATACGGGGTGGATGACGGCAGATGTTTTTAACCAGTTTATcactgaaaaattatttttttag
- Protein Sequence
- MPKIPQYTKDTLDEALEKINDKTMSLQAVAKKYNIPRATLQLNLKDPTSRSQFGPTPYLTEEEEDTIEDWNYLTSENLLEAIRDPQRVFNADETGFKLCPSTGRVLAAKGDKNVYAVEQGNSKENVTVLFTFFADGKICPPLMVFPYKRLPEKIATSVPPEWGIGRSDTGWMTADVFNQFITEKLFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -