Basic Information

Insect: Dendrolimus pini
Gene Symbol: -
Assembly: GCA_949752895.1
Location: OX457126.1:12155985-12158516[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.02 1.9 10.1 0.3 1 21 36 56 36 57 0.95

2 10 0.52 49 5.6 6.2 1 23 64 88 64 88 0.94

3 10 0.029 2.7 9.5 0.3 1 23 159 181 159 181 0.98

4 10 0.061 5.8 8.5 2.4 1 23 249 271 249 271 0.98

5 10 2.6 2.5e+02 3.4 0.2 1 23 281 303 281 303 0.84

6 10 0.14 14 7.3 1.3 1 21 309 329 309 332 0.88

7 10 0.64 60 5.3 3.9 2 17 371 386 370 387 0.90

8 10 0.00013 0.012 17.0 2.9 1 23 527 549 527 549 0.97

9 10 0.00029 0.027 15.8 0.1 1 23 556 579 556 579 0.97

10 10 0.00028 0.027 15.9 0.5 2 23 617 638 616 638 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.02	1.9	10.1	0.3	1	21	36	56	36	57	0.95
2	10	0.52	49	5.6	6.2	1	23	64	88	64	88	0.94
3	10	0.029	2.7	9.5	0.3	1	23	159	181	159	181	0.98
4	10	0.061	5.8	8.5	2.4	1	23	249	271	249	271	0.98
5	10	2.6	2.5e+02	3.4	0.2	1	23	281	303	281	303	0.84
6	10	0.14	14	7.3	1.3	1	21	309	329	309	332	0.88
7	10	0.64	60	5.3	3.9	2	17	371	386	370	387	0.90
8	10	0.00013	0.012	17.0	2.9	1	23	527	549	527	549	0.97
9	10	0.00029	0.027	15.8	0.1	1	23	556	579	556	579	0.97
10	10	0.00028	0.027	15.9	0.5	2	23	617	638	616	638	0.98

Sequence Information

Coding Sequence: ATGGCTCTGGATTTAATACCTGAAAAACATAGCATCAAAAATTTGCTTTTTACAAAGGCCATACCAAATTATGTGATCCCAGTACCAATAGACGGGCATAAGGTGTATTCGTGCACTGATTGTGGGGACAAgTTCATATTCGAAAGCAGTTATGAATACCACATTAATCGGAAGTCAGTTAAGATTAAATACATGTGCCGACACTGTGCTCATCCAAAAATATTCTACAATAGGTGTAATTTACTATCTCATATCAGATCTCATGCTTTTAAAACTGCTACCATCAATGTCACTGACCTTGAAATAGAGCCTTTGCCATTGAGTCATTTTAAGAATCTGCCAAAACCGAAATCTTCACAAACAGTTGTGATTAAGAAAAAAGCAGTATGTATAGAATGTGAAACTGATTTGTTAGGGCCTGGGGCAGTATATAAGAATAGGGGGAGACATTTCATGCAATTCACCAATACAGTTTATACATGCCCTATCTGTTTATTTGCAATGCCTACTGAGTGTGGACTCAAAGTGCATATGCGTCTGCACTTTGAATATCCACCATACTTTTGCCCAGAATGTGGTTGCCACATACCAAGTCAGTGTGTAAACTATCCATATAACCATGATTGTGAAGGCTTCAGAATGATGAGGGCTACTTCAAGATTAAAGTGTCAAATAGCAAAATGTGCTCCTTTCCACCCTAGTGAATCAAAAGACCACATGAAAAAGGTACATTCAAAAAGAGTATATAAGTGCCCATTTTGTGTTGTAGCTTGTTTCAATGAATCAACTATGAGAactcatttaaaaaatcataaaagttcTGGTACTCCATTAATATTTTACCAATGTGAAATCTGTCCAGGGAGGCTAGTACTCTTTAATCAGATGGATCTCCATTTGAAGAGGCATCCAATTTACACTGTATATCCATGTTGGACATGTACTTTGACATTCAAAGAGTTAAAAGATTTAATAGAGCACTGTGCCACTAAACACCAAGAAATAAGTAAAACTGTATTAAAATGGTTTCCTAATATTGTCAATGAGATTGCTTCTAATGCCATTACATCTGCAAAAGATAAATCTAAGAGAGTAtatagagttgttaaaaaatgtGACCAATGTCAAAGAAGTTTTACATACAAAtgtaattataatgaaataccAAAGCTACCAAATGAATGTCCATACAAATGTTCAGCAAACTGGTCATATAAAATTTTACCAGATGAAGGTAACAGTGTTGATGGTGAAGTAAATCAAGAACATGCAGTAAATATATCAACAGAAATAGTATGCAATTTATGTAAAACTCGTATGTCTCAAGACTgggatattattaaaaaacattatgCTGAAAAGCACACCACATATAAGTGTTTAGACGCTAAACTAGTTCTACCTAAGATtgatataaacaaatatttaactttaaataaaaataagagaGGCAGAGCTGTTGGTGCAaccttgcaacaaataaccaaaagaaagaaaagacgtggtaaatttaacaaaaaatacatagatTCGATCAAAACAATATCCATAATCACTACAGTTACAgacaaaaatgattttaattgtaatatttgcaAAGAAAAATGTAATGACAAACAGTCATTAGAGAAACATATGATTAGCCACAGGGACCCATGCATGGCATATCAATGTTTGGAATGTGGACAGAGTTTTGTTGTTAAACCATCATTCTCAACACATTTGTTAGTAGTTCATCAAATAACAGATCCAGATGAATATATAGCCAGCAAAGAATGTTACAATGAAAAGGCACTTGCAGTGAGTCAGCAACAAGACCCAGTCAATGAAGAACCACTTCATGAAAATCAATGCAGTATATGTAGAGAACAATATGACAATCCTGAAGATTTGAAAAAACATTTTAGGGTACACGGTATGGCATTCCTGTTAAAGAGTACTTCAAATAAGAATAACGACTCTGCATAG
Protein Sequence: MALDLIPEKHSIKNLLFTKAIPNYVIPVPIDGHKVYSCTDCGDKFIFESSYEYHINRKSVKIKYMCRHCAHPKIFYNRCNLLSHIRSHAFKTATINVTDLEIEPLPLSHFKNLPKPKSSQTVVIKKKAVCIECETDLLGPGAVYKNRGRHFMQFTNTVYTCPICLFAMPTECGLKVHMRLHFEYPPYFCPECGCHIPSQCVNYPYNHDCEGFRMMRATSRLKCQIAKCAPFHPSESKDHMKKVHSKRVYKCPFCVVACFNESTMRTHLKNHKSSGTPLIFYQCEICPGRLVLFNQMDLHLKRHPIYTVYPCWTCTLTFKELKDLIEHCATKHQEISKTVLKWFPNIVNEIASNAITSAKDKSKRVYRVVKKCDQCQRSFTYKCNYNEIPKLPNECPYKCSANWSYKILPDEGNSVDGEVNQEHAVNISTEIVCNLCKTRMSQDWDIIKKHYAEKHTTYKCLDAKLVLPKIDINKYLTLNKNKRGRAVGATLQQITKRKKRRGKFNKKYIDSIKTISIITTVTDKNDFNCNICKEKCNDKQSLEKHMISHRDPCMAYQCLECGQSFVVKPSFSTHLLVVHQITDPDEYIASKECYNEKALAVSQQQDPVNEEPLHENQCSICREQYDNPEDLKKHFRVHGMAFLLKSTSNKNNDSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00433651;
90% Identity: iTF_00433651;
80% Identity: -