Basic Information

Insect: Dendrolimus pini
Gene Symbol: RTase
Assembly: GCA_949752895.1
Location: OX457151.1:6083802-6090749[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.2e-06 0.00012 23.3 0.3 1 23 346 368 346 368 0.98

2 7 0.021 2 10.0 0.5 2 23 376 396 375 396 0.96

3 7 0.17 16 7.1 2.2 1 21 402 422 402 427 0.92

4 7 4.9e-05 0.0047 18.2 2.1 1 23 435 458 435 458 0.95

5 7 0.0012 0.11 13.9 2.2 1 23 464 487 464 487 0.96

6 7 8.9e-05 0.0084 17.4 0.4 3 23 499 519 498 519 0.94

7 7 9.5e-05 0.009 17.3 2.2 2 23 526 548 525 548 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.2e-06	0.00012	23.3	0.3	1	23	346	368	346	368	0.98
2	7	0.021	2	10.0	0.5	2	23	376	396	375	396	0.96
3	7	0.17	16	7.1	2.2	1	21	402	422	402	427	0.92
4	7	4.9e-05	0.0047	18.2	2.1	1	23	435	458	435	458	0.95
5	7	0.0012	0.11	13.9	2.2	1	23	464	487	464	487	0.96
6	7	8.9e-05	0.0084	17.4	0.4	3	23	499	519	498	519	0.94
7	7	9.5e-05	0.009	17.3	2.2	2	23	526	548	525	548	0.95

Sequence Information

Coding Sequence: ATGATGAACACAACCGAACATATATTAGCCTATCAATCTAAAATAGACAATACACCAGTTAATTCTATGGCTTTTAGTTCCATAGATCCATGTGAAGTTAAAGGAATTGTTGCAAGTTTTAAGTCAAATACTGCACCGGGTTGGGATAAAATCAGTACGAAccttattaaacaaaatattaatatccttGTTTATCCTATTTGTTATCTTTGCAACTTAAGTCTAGAGACTGGAACATttcctaaattatttaaaagagcCGTAGTTTGCCCTATTTTCAAGTCTGGTGATAAAGATAAGCCTACCAATTACAGACCTATATCACTTTTGTCAGTTCTTTCAAAGATTCTGGAAAAACTTGTTAATAAAAGGCTCATATCTTATCTGGAGAAAAACAATCTTATAAATCCAAATCAATATGGTTTCAGAATAGGTAAATCTACTGAAGAGGCTGTTCTCAAACTAACTACAAATATTACCTCAAACTTAGATTCTGGTCATAGAACTATTGGAGTCTTTCTTGACTTACAGAAAGCCTTTGATACCGTATCGATTTATATTCTCTTAACTAGATTGGAAAACATTGGTATCCGTGGTATAGTTTTAGATTGGTTTAGAAGTTATCTGTTGGATAGGGAGCAATGCGTTCGTGTACAAAATACTCAAAGTGATATACACACATGCAACTTTGGCGTGCCGCAAGGGAGTACATTAGGACCAACCTTATTCCTGATGTACATAAATGATCTCTTTAACAATAATCTAACAGATATGGAAATCGTTATGTTTGCAGATGACACTGTTCTACTTTTTCAAGGCCATTCTTGGAATGAAACTTTTAAAAGGGCTGAGTTGGGTCTATCTAAAGTCACACAATGGCTTGAAAATAGTTTATTGTCCGTAAATACATCAAAAACCAAGTACATATGTTTCCACTTATCTCATCTGACATGTCCTGATTTAAACTATGAACTCAAAATTCATATCAATAAGAATCTTAGATATAAGCACATACAGAGATACCATAGAGAAGGATATGAGTGTGGTATATGCGGGAAGAAGTTTCCGTTCAAAGACTATTTGGCGAAACATGTCAGACTCCACGAATCGCCAAAACCTCGGATAGAATGTGAAATATGCCGCAAAATGGTGCGAACGGATCTGTTGAAAACCCACAAACGGATTCACGCCGAAAGGGAGACGTTTTCTTGTGTTGAATGCGACAAGAACTTCGCCTGCAGAGCGTCCTATGAGAATCACCTGAAGTACAGCCAGTCTCACGCCACCATTGATGTCTTAAAGTACAAATGTTCTAAATGTGACAAAGGGTACAGGAGCAAGGGCGAGCTTCGTGATCATTTCAACTATCAGCATTTGGGGAAAACACAGCACAATTGCCCCGTTTGTGGGAAGGCACTAGCTACGAGGCGTTGTATCTTAAGACACATAAGGAGGACACACGAGGATATCAAGGAGGGATCCAAAGACAAGATTTGTCAACAATGCGGGAAAGCATTTAGGGATAAAAAAGGTCTTCGCGAGCACGAGTTCATTCATACCGGCGAGCGCCCTCTGTCGTGCGAGATATGCGGATGTACATTCAGACAGAACGCCTCCCTTTATACACATAAAAAGAGAGTTCACAAAATATATCCCGAGAAGAAACGAATCGAGCTTGTGAAACCAACGAGATGA
Protein Sequence: MMNTTEHILAYQSKIDNTPVNSMAFSSIDPCEVKGIVASFKSNTAPGWDKISTNLIKQNINILVYPICYLCNLSLETGTFPKLFKRAVVCPIFKSGDKDKPTNYRPISLLSVLSKILEKLVNKRLISYLEKNNLINPNQYGFRIGKSTEEAVLKLTTNITSNLDSGHRTIGVFLDLQKAFDTVSIYILLTRLENIGIRGIVLDWFRSYLLDREQCVRVQNTQSDIHTCNFGVPQGSTLGPTLFLMYINDLFNNNLTDMEIVMFADDTVLLFQGHSWNETFKRAELGLSKVTQWLENSLLSVNTSKTKYICFHLSHLTCPDLNYELKIHINKNLRYKHIQRYHREGYECGICGKKFPFKDYLAKHVRLHESPKPRIECEICRKMVRTDLLKTHKRIHAERETFSCVECDKNFACRASYENHLKYSQSHATIDVLKYKCSKCDKGYRSKGELRDHFNYQHLGKTQHNCPVCGKALATRRCILRHIRRTHEDIKEGSKDKICQQCGKAFRDKKGLREHEFIHTGERPLSCEICGCTFRQNASLYTHKKRVHKIYPEKKRIELVKPTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -