Dpin029411.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457150.1:11568952-11570916[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.2 1.2e+02 4.4 0.5 3 23 155 176 154 176 0.94 2 10 0.92 87 4.8 0.2 1 19 179 197 179 199 0.82 3 10 0.18 17 7.0 4.8 1 23 204 227 204 227 0.94 4 10 0.0018 0.17 13.3 2.1 1 23 230 252 230 252 0.96 5 10 2.8e-05 0.0027 19.0 0.2 2 20 257 275 256 277 0.94 6 10 2.3e-06 0.00022 22.4 0.6 1 23 296 319 296 319 0.95 7 10 4.5e-06 0.00042 21.5 1.7 1 23 325 347 325 347 0.97 8 10 0.0047 0.44 12.0 0.5 1 23 353 375 353 375 0.98 9 10 0.0011 0.1 14.0 1.3 1 23 381 404 381 404 0.95 10 10 3.6e-05 0.0034 18.7 1.5 2 23 410 431 409 432 0.94
Sequence Information
- Coding Sequence
- ATGGTTGATGATTTATGTTTACAAAACCTGTTATCCAGTGTTGTGAATGAAAAATTCTATAGCCACTGTAGGTTATGTTTGAGGGAGATTTGTGAAAAGTTCGTCCGATTTGATGACAATTTGCCTATCGATGAGGACAATATGCTATTTAAATCGCTGGCAGACGTTTTAAGCAGGTTATTTGGTGACGAGATTAGCCAAGAAATTTCAGGCATAGATGGTGTATGTACAGACTGTGCTGATCAAGCCATACAGGCTTTCAAGTTTATTGAGAAATGTAATAATGCAACCAAATTACTTCACAGTGTTTTTGATAATGTTTCTGGAGCTCTCAATGTGGATATTGACACTTCAATCAAACAAAATATGTTTGTTATAGTTGGTTCTGAAGAAAGCAAAATTATTTTGGTGAAAAATGAAGCTGAAAAAACACAGAAAGACTTGGTACAAAAAGTTAAGATATGTTTAGAGTGTAATGAACTTTTTGATGATATCATTCATTTCAAGATGCATAACATAACTTACCACTCTCTTTTCACATGTGAAAAATGCTTAGAAACATTTGAACATGAAATGGAACAAATAGTTCACAATGAAAGTATACAAATGTATGATTGTGATCATTGTAATGACTATTATTGTACAGAAGATagcttaaaaaaacataaactgAATCTTCATTCTACTCATATATGCAAAATATGCGGTAAATCCATCAAAGgcttacaaaaattaaaaaatcatgaaaagaaACACAGTGTCAAAAGCACTTGTGAGAAATGCGGAAAATCATATGCAACCAAAtcatcatatttaaaacacattgaATTATGTTTAGAGGACAAATTGGTGAAGCATCCAATAAGAAGTAACCTTGTtagaaattatgtatgtaaattgtgCGGTAAAAGATATAGTACATCTTCAGGATTACGTGTTCATGAAAGATTTGTACATGGTAATGCAAAGCCTCATGTTTGCGAATATTGCAATAAAAAGTTTACTGCACCAAGTTATCTGAAAGTCCATATGGTAAAGCATACAGGAGCAAAGAACTATGCATGTGATAGATGCAATGGAAAATTCGGGTCAAAAGAAGCTTTGTTATACCACACTAGACGTCATACAGGAGAAAGACCATATAGTTGCCATTTGTGTGATCAAAGATTTGTGAATGCATCAGCCAGAGCtgaacatataaaatttaaacatgtaGGTCCAACCTTGATGTGCGAAGTTTGTCCTAgaaaatttgtaacaccaactTTTTTGAGAATGCACATGCAAAAGCATCACGATCCAACTAGCAAATTATTTGCCCCCAGAACTATAATGCCTGCAAATATTCCTGGAGGGGACAATATGAGGATTAGACTAAACCAAAATCAAGATGATCAAATAATGgcttaa
- Protein Sequence
- MVDDLCLQNLLSSVVNEKFYSHCRLCLREICEKFVRFDDNLPIDEDNMLFKSLADVLSRLFGDEISQEISGIDGVCTDCADQAIQAFKFIEKCNNATKLLHSVFDNVSGALNVDIDTSIKQNMFVIVGSEESKIILVKNEAEKTQKDLVQKVKICLECNELFDDIIHFKMHNITYHSLFTCEKCLETFEHEMEQIVHNESIQMYDCDHCNDYYCTEDSLKKHKLNLHSTHICKICGKSIKGLQKLKNHEKKHSVKSTCEKCGKSYATKSSYLKHIELCLEDKLVKHPIRSNLVRNYVCKLCGKRYSTSSGLRVHERFVHGNAKPHVCEYCNKKFTAPSYLKVHMVKHTGAKNYACDRCNGKFGSKEALLYHTRRHTGERPYSCHLCDQRFVNASARAEHIKFKHVGPTLMCEVCPRKFVTPTFLRMHMQKHHDPTSKLFAPRTIMPANIPGGDNMRIRLNQNQDDQIMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00433490;
- 90% Identity
- iTF_00433490;
- 80% Identity
- -