Dpin031726.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457153.1:6255378-6259064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.083 7.8 8.1 1.9 1 23 54 76 54 76 0.97 2 12 0.48 45 5.7 5.8 3 23 147 168 146 168 0.96 3 12 5.1e-05 0.0048 18.2 1.1 3 23 176 197 175 197 0.97 4 12 1.7 1.6e+02 3.9 0.3 3 23 204 225 202 225 0.93 5 12 0.065 6.2 8.4 3.0 1 23 229 252 229 252 0.96 6 12 8.8e-05 0.0083 17.5 0.6 2 23 259 281 258 281 0.96 7 12 0.22 21 6.7 0.2 3 23 289 309 288 309 0.94 8 12 0.046 4.4 8.9 4.9 1 23 336 359 336 359 0.97 9 12 0.0007 0.067 14.6 0.5 2 23 366 387 365 387 0.95 10 12 3.6e-06 0.00034 21.8 2.4 1 23 393 415 393 415 0.98 11 12 1.5e-05 0.0014 19.9 0.1 1 23 421 443 421 443 0.97 12 12 1.9e-06 0.00018 22.7 2.1 1 23 449 472 449 472 0.97
Sequence Information
- Coding Sequence
- ATGAAAACAGAAGACGCTGTATTTGAAGATAAATACAAGAGGCCGCttaaaacagtaattaaatCAGCGCAAAcatcaaaaattacaatattgagAGCTAACGCTATAGCTGTGTTGAAGAACTCAACGCTAATGCCATTCCGATGGCTAAAAAACGTTTACAGATGCTTCTTTTGCTATGACATGTTTGCGGACACGAAAGATTTAAAATCCCATCAAGAGCAACACGCCCTTGGTGACAATATAACGAAGATCATGCAAAACTATTGGGATCCAGCCGTTTACGTCGACATAACAAATATTACTTGCAAGCTATGTCTAACAAAGCACACGGATATAGATGCATTGATAGACCACTTGATAGGAGAGcacaaaatacaatacaataaagaagttaaaacatttgcaacattccGATTGAATTTAGACACAGTAGATTGTTTAGAGTGCCGACAATCATTTCGAACTTTCGGGCATATGTTAATGCATACAAAAAGGTGCCATAAAGGTAATTCAGAAGCTCTTTGCGAAACATGCggtaaatattttaagaatagtATAGAATTAAAGAAGCACAACAAAACAGTTCATGATAAGAAGTCTGTGATATGCAGAGTGTGCGGTGTTAATGTCGAGAGCTTTACCCGGATGAGGACACATATGGAGCGGTTCCACAACAAGAGGTATAAGTGTTTCTACTGCGACGACATGTTCCCGAGCCACTACAAACGCTCTAGACATATGCTGGAAGTGCATAAGAGGAAAGAAAAGGTGAAATGTACTGAGTGTGACTTATCTTTTGTTTTCCGAAGCTCGATGATGAGGCATGTTAGGGAGAGTCATCTCCGGGAACGCAATGAAATTTGCCCCTTGTGCGGTTTCCAAGCGTTTGGAAAGGGGCGACTCTCGGTACATATGAAGAAGCATAGCGACGAAAGAGAGTTTAGTTcgAGTCAGAGAGACCGTCATATAAATCAAATTCATAGTCTACAAATACATCCTACCCACAAATGCGACAGATGTTCAATGGTGTTCAAAAAGAAACTAACCCTATCATATCATTATAAGAAAGTGCATTTGAAACAGAAGAACGTGACTTGCGAAGTTTGTGGCATGACGTTCTTTGATACCAGGAACTTGAATCTACATAAGGTTAGGCACGCTGGTGATAAACCTTTCGAGTGTGACACGTGTCATAAAAAGTTTACTCGAAAACCAGCCTTGAAACTCCATGTACGAATTCATACAGACGAAAGAAGATACGTGTGTAAAATGTGCGGTAGAGCTTTTGTACAGTGGAGCGCATTGGATGGACATTTGCATATACACAGCGACGAGAGGAACTTCAAATGCTTGATCTGTGATAAGGCGTTCAAGACGAAGAAGACGCTGAGGAAACATTCGTTAACTGTGCATCAGAAAGGCAGCACACGAACTATCCATCAAGATCTATAA
- Protein Sequence
- MKTEDAVFEDKYKRPLKTVIKSAQTSKITILRANAIAVLKNSTLMPFRWLKNVYRCFFCYDMFADTKDLKSHQEQHALGDNITKIMQNYWDPAVYVDITNITCKLCLTKHTDIDALIDHLIGEHKIQYNKEVKTFATFRLNLDTVDCLECRQSFRTFGHMLMHTKRCHKGNSEALCETCGKYFKNSIELKKHNKTVHDKKSVICRVCGVNVESFTRMRTHMERFHNKRYKCFYCDDMFPSHYKRSRHMLEVHKRKEKVKCTECDLSFVFRSSMMRHVRESHLRERNEICPLCGFQAFGKGRLSVHMKKHSDEREFSSSQRDRHINQIHSLQIHPTHKCDRCSMVFKKKLTLSYHYKKVHLKQKNVTCEVCGMTFFDTRNLNLHKVRHAGDKPFECDTCHKKFTRKPALKLHVRIHTDERRYVCKMCGRAFVQWSALDGHLHIHSDERNFKCLICDKAFKTKKTLRKHSLTVHQKGSTRTIHQDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -