Basic Information

Insect: Dendrolimus pini
Gene Symbol: SCRT1
Assembly: GCA_949752895.1
Location: OX457125.1:4650838-4656563[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 7.5e-08 7.1e-06 27.1 1.7 1 23 212 234 212 234 0.99

2 5 0.0013 0.13 13.7 0.0 2 23 244 265 243 265 0.97

3 5 8.4e-06 0.0008 20.7 0.2 1 23 269 291 269 291 0.97

4 5 3.5e-08 3.3e-06 28.2 0.6 3 23 299 319 297 319 0.98

5 5 4.8e-05 0.0045 18.3 2.2 1 21 325 345 325 346 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	7.5e-08	7.1e-06	27.1	1.7	1	23	212	234	212	234	0.99
2	5	0.0013	0.13	13.7	0.0	2	23	244	265	243	265	0.97
3	5	8.4e-06	0.0008	20.7	0.2	1	23	269	291	269	291	0.97
4	5	3.5e-08	3.3e-06	28.2	0.6	3	23	299	319	297	319	0.98
5	5	4.8e-05	0.0045	18.3	2.2	1	21	325	345	325	346	0.95

Sequence Information

Coding Sequence: ATGCCTTCATTGTTATACAAACTTGAAGGTTACACCGAGGAGCAGCCTTCCACACAGTTCACCGCCCAGCTGCCAAGTGAGGTGAGCCCGGCCCCCGCCGGCCCCGCGCCTCCTCCCCCTGCTCAGCCTATCACCTACGCACTTCTGCAACTATCCCCCGATTCGACAGAACAGTCCTTTCTCCATGTACAACTCCAACCTTCTGTCTCCCCCCCTCCGCCACCGGCGAGCGGCAAGTCCATCTCAATGTGCTACACGAGCACTGGAGCGTTACTCTCCCTGCCACCTAAAAAAAAGGATATCTACCGTCCGTACTGCCTGGGCGATCGCGCCGCACACCTTAACCGCCCCGAGGAGGACTTAAAAGCGGCGCACGCCATCCTTGATCTTAGCCAACATGCCGTCTACCTGACCACGCCACCGCGAGCCGAACCCGCACCGCCGGAACCACCTTTGCCACCATCTCCACCTTCACCACCGGAGCCACCAGCACAAGAGCAGCAAAGCGAACGTCCCCGGGAAACCGTAGCTTACACCTACGATGCATTCTTCGTCAGCGACGGGCGATCAAAACGACGCAACTACGCCAATGCACCCGTCGAGTGCGCACAACAGCCTGAGCCTAAGTCGAAGTACACGTGTAGTGAGTGCGGGAAACGATACGCAACTTCGTCGAACTTATCGCGGCATAAGCAGACACACCGTAGTCTCGATTCTGTGTCGGCGAAGAGGTGTGGTGAGTGCGGGAAGGCTTACGTGTCGATGCCCGCGCTCGCCATGCACGTGCTCACCCACCAACTGTCGCACGTGTGCGGTGTTTGTGGGAAGCTGTTCTCGCGACCGTGGCTGCTACAGGGTCACTTGCGCTCCCACACTGGTGAAAAACCTTACGGATGTGCACACTGTGGCAAGGCTTTCGCGGACAGATCGAACTTACGCGCACACATGCAGACTCACTCCTCAGATAAAAACTTTGAGTGCACGCGTTGTCATAAGACGTTTGCACTCAAAAGCTACCTCAACAAGCATCAGGAGTCAGCTTGCGTTCGTGACGAAGACTCGCCACAGCCAGAACCGCCCGCCTCCGCCTCCGGATAG
Protein Sequence: MPSLLYKLEGYTEEQPSTQFTAQLPSEVSPAPAGPAPPPPAQPITYALLQLSPDSTEQSFLHVQLQPSVSPPPPPASGKSISMCYTSTGALLSLPPKKKDIYRPYCLGDRAAHLNRPEEDLKAAHAILDLSQHAVYLTTPPRAEPAPPEPPLPPSPPSPPEPPAQEQQSERPRETVAYTYDAFFVSDGRSKRRNYANAPVECAQQPEPKSKYTCSECGKRYATSSNLSRHKQTHRSLDSVSAKRCGECGKAYVSMPALAMHVLTHQLSHVCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSSDKNFECTRCHKTFALKSYLNKHQESACVRDEDSPQPEPPASASG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01252129;
90% Identity: iTF_00948199;
80% Identity: -