Basic Information

Insect: Dendrolimus pini
Gene Symbol: -
Assembly: GCA_949752895.1
Location: OX457147.1:7185399-7204121[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.9e-06 0.00027 22.1 2.0 1 23 254 276 254 276 0.99

2 12 0.042 3.9 9.0 1.1 1 23 284 307 284 307 0.94

3 12 0.00072 0.068 14.6 2.8 1 23 402 424 402 424 0.99

4 12 0.036 3.4 9.2 1.6 2 23 433 455 432 455 0.97

5 12 0.2 19 6.9 4.6 1 23 459 481 459 481 0.98

6 12 0.00083 0.079 14.4 2.5 1 23 486 509 486 509 0.97

7 12 0.15 15 7.2 0.8 1 16 513 528 513 536 0.81

8 12 0.025 2.4 9.7 0.0 1 20 555 574 555 576 0.95

9 12 0.18 17 7.0 0.1 3 23 623 644 621 644 0.93

10 12 3.1e-06 0.0003 22.0 1.2 1 23 653 675 653 675 0.98

11 12 0.0004 0.037 15.4 0.6 3 23 683 703 681 703 0.96

12 12 1.4e-05 0.0013 20.0 2.5 1 23 709 732 709 732 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.9e-06	0.00027	22.1	2.0	1	23	254	276	254	276	0.99
2	12	0.042	3.9	9.0	1.1	1	23	284	307	284	307	0.94
3	12	0.00072	0.068	14.6	2.8	1	23	402	424	402	424	0.99
4	12	0.036	3.4	9.2	1.6	2	23	433	455	432	455	0.97
5	12	0.2	19	6.9	4.6	1	23	459	481	459	481	0.98
6	12	0.00083	0.079	14.4	2.5	1	23	486	509	486	509	0.97
7	12	0.15	15	7.2	0.8	1	16	513	528	513	536	0.81
8	12	0.025	2.4	9.7	0.0	1	20	555	574	555	576	0.95
9	12	0.18	17	7.0	0.1	3	23	623	644	621	644	0.93
10	12	3.1e-06	0.0003	22.0	1.2	1	23	653	675	653	675	0.98
11	12	0.0004	0.037	15.4	0.6	3	23	683	703	681	703	0.96
12	12	1.4e-05	0.0013	20.0	2.5	1	23	709	732	709	732	0.98

Sequence Information

Coding Sequence: atgcgtGAATTACCTAAAGCTTGTATTGCATGTTTAAGCACGAACATAAAGTTGCATAGTTTAAATAGTCAGAATTTACGAAGCGAATTTAATTTGGTATCCGGCCTACAAaCCTTTCAGGGGGACGGCCTGCTTGACTTGATTTGCTTCGAATGTTTGGCATACGTGAGACGCTGTTGCACATTTAGAGCTAAATGCCAACGAGCTGTTTACTTTTTGCAGCAACTTCTGGATAAAAATCAAGAGATAAACAAATTccatttaaaaaatgcaaatcGTAAAGATTTGAAAATAGCTCCGGCTCTATCATATTTAAATTTGGAGAGAACAAATTATCAAAAAGTACAATTCAAATGGACGAAGCAGAACCGAATAGGTTTTATTAACAAAGACAGTATTCCTGTGGTACATTATAGTACATTTGAGAATAATGAAGATCAATGTTTTGAGGTTCCACTAATTAATAATGAGTTGAATGATGATGTAACTGTTAAAACTGAAGCACAGGAGCCAGAATCTTCTGAaggtcaaattttaaatacctttAATACAGATGATAATGAAAATGTTGAGAATTTCTTTGATGACAATGAAGACATTCAAATTGAGACAGATATTGATAATGTAAATGAGGAATGTAATGAAAAAGGTAAAACAGTAGGAACAAAAATCAAGGAGGAATATGCTGATTTGTATCCAATATCAAGGAAAGAAGCCAAGGCTGTCTTTGAAGTGTGGAAGCTTTTCCAAAACGGtagttttaaatgtaatatatgtaaatattcatTTACTAATGAAGAAAAGTTAAATGTACACACTAGGATGCATAATACGCATATAAGTGGAACCTTTCAATGTGATATATGTGTTTACTACTACAAAACCGATTTCCTGCTTCAAACACATATTACAGAgaaacacatgtacaaatatgtTTGTAGAAAATGTCCTGAAGTTAATTTTAACAGggCATCAGCAAAACATCACTATGTAATGAATCACTTAAGACAATGTTTAGATGCAGATTGGTTTAGTCTTAGGCCAAATTGGCTCAGAAAGAAATCTTTGCAAAGAATAAAAGTGCAGAAGGCAGCACCAAAGCAGTTGCCTAAAGATTTTCCCTTATACACTCCAATAAGTCAGGACGAACAGTATTCATTGGTCTTAGAACGAAGAAAAACTGCAAATTATCTCGAGTCAAAGTTCAAATGTGAGCTTTGCTTTAAAGGATTCAGAGAGGAAAAGACTTATAATAACCATATGCAGAAACATGATCCTGATGTCTCTGGTAAGATGCAGTGTGATATGTGTAAAGTATATTTCAAAGATGGAAGAAAGATGTACAAACATATGAACACTACACATTTATTCAAATACTCGTGTCAGATGTGCGAATTTGTCTGCTACAATAAGAGTCAAGCGCACATTCATTATAGGTGGCATAAGAATGTTGTTTATGATTGTCCACACTGTGATAAGGTGTTTTTTAAAATCTCAACCCGGCTGACCCATATAAGAATGAAACATCCTTCAATGTATATCTGCAATCTTTGTGGGCATAGTTTTGTTAGTGAAGCAGGACTTGGATGCCATAAGCAGCTCGTTCATACGAAGGAGgaaaGAATATTGAGTGAAAATGTAACTGTGGACCAGACCGATCAATATTATTGCGACGAATGCGACATTCAATTTATAAACGAAAACGCTTTTGCAACGCATCTTGGAAGTTCAAATAAACATGCCACTACTAACATTTCGTGTAAACCGATTCGGCGGTCTGCGAGGGACGACGGCCGGAAGACTCGCGGCAGGCCGCGGAAGTCGTGCTCGGAGATCATCAACAATGGAATAACCACCTCCAGCAATTGCGAAGTGTGCGGCAAGTTCCTCGCGAACGACGTGCAGGCGCGCCGGCACTACGAGTCGGAGCACCCCGGCACTGAGTTCCTCAAGAGGTATATGTGCGACGTCTGCGGCCACACCACTAGGCAATACGCTAATCTCATGGTTCATATGCGAACCCACACTCGCGAGAAGCCCTACGGATGTCCCCACTGCGACAGGAGATTCAGCATGCCCAGTAACAGGGATCGGCATATCGTTGTTCATACAGGTGAAAAGAAATACCAGTGCCAACATTGCAGCCGTCGTTTCACTCAAAGCAGTGCTGTGAAATTGCACATCCAGACCGTGCACTTGAAGATACCTTACGCGCCTTGGGACAAGAAGAATCGCAAGCGCAGGAAGGACGAGGCGAACGCGCCCGTGCTCGCGCTTTCGGCCGACGCCGCCTCGCTCCTGAACCCGAGCGTGGACAAAATGATGATCTGGTAG
Protein Sequence: MRELPKACIACLSTNIKLHSLNSQNLRSEFNLVSGLQTFQGDGLLDLICFECLAYVRRCCTFRAKCQRAVYFLQQLLDKNQEINKFHLKNANRKDLKIAPALSYLNLERTNYQKVQFKWTKQNRIGFINKDSIPVVHYSTFENNEDQCFEVPLINNELNDDVTVKTEAQEPESSEGQILNTFNTDDNENVENFFDDNEDIQIETDIDNVNEECNEKGKTVGTKIKEEYADLYPISRKEAKAVFEVWKLFQNGSFKCNICKYSFTNEEKLNVHTRMHNTHISGTFQCDICVYYYKTDFLLQTHITEKHMYKYVCRKCPEVNFNRASAKHHYVMNHLRQCLDADWFSLRPNWLRKKSLQRIKVQKAAPKQLPKDFPLYTPISQDEQYSLVLERRKTANYLESKFKCELCFKGFREEKTYNNHMQKHDPDVSGKMQCDMCKVYFKDGRKMYKHMNTTHLFKYSCQMCEFVCYNKSQAHIHYRWHKNVVYDCPHCDKVFFKISTRLTHIRMKHPSMYICNLCGHSFVSEAGLGCHKQLVHTKEERILSENVTVDQTDQYYCDECDIQFINENAFATHLGSSNKHATTNISCKPIRRSARDDGRKTRGRPRKSCSEIINNGITTSSNCEVCGKFLANDVQARRHYESEHPGTEFLKRYMCDVCGHTTRQYANLMVHMRTHTREKPYGCPHCDRRFSMPSNRDRHIVVHTGEKKYQCQHCSRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKDEANAPVLALSADAASLLNPSVDKMMIW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00433419;
90% Identity: iTF_00433419;
80% Identity: -