Dpin031791.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457153.1:6840664-6848684[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.086 8.1 8.1 1.1 3 23 176 197 174 197 0.95 2 18 0.17 16 7.1 0.2 2 23 223 244 222 244 0.96 3 18 0.061 5.8 8.5 0.1 2 23 270 291 269 291 0.96 4 18 0.00031 0.03 15.7 1.4 2 23 296 318 295 318 0.95 5 18 0.36 34 6.1 0.9 1 20 324 343 324 345 0.91 6 18 0.25 23 6.6 0.6 1 21 352 372 352 375 0.87 7 18 0.0061 0.57 11.7 1.2 1 19 381 399 381 404 0.91 8 18 0.21 20 6.8 0.6 3 23 411 431 409 431 0.94 9 18 0.00075 0.071 14.5 2.2 1 20 436 455 436 458 0.93 10 18 0.033 3.1 9.3 0.1 3 23 491 512 491 512 0.96 11 18 0.0085 0.81 11.2 1.5 2 23 538 559 537 559 0.96 12 18 0.0096 0.91 11.0 0.2 1 23 583 605 583 605 0.98 13 18 1.2e-05 0.0011 20.2 0.2 1 23 609 632 609 632 0.98 14 18 0.014 1.3 10.6 1.1 3 23 668 689 667 689 0.97 15 18 0.005 0.47 11.9 1.1 1 23 695 718 695 718 0.91 16 18 0.0019 0.18 13.3 0.1 2 23 724 745 723 745 0.95 17 18 0.0028 0.26 12.7 1.0 1 20 751 770 751 773 0.93 18 18 0.00061 0.057 14.8 2.8 1 23 779 802 779 802 0.97
Sequence Information
- Coding Sequence
- ATGCTCGGTCAACAAGCCAGAGAAGAATTACAGTACGTACTGGGCGATTATCATTTTCAATGGCTGTTTACATTCTCGCGGGAAACGGGAACGTGGGGCGTCTCTTACACTCGTGCCCATTCTCACTATCTTTTAGATCAGAGTCTGGCAAACATTCTTATACCACAGATAAACAAATCTCAACACGTGTACAGTTCTTGCAATCCACGAAGTCGAGTGGGCTTTACTAGTAGCAAACACCTCTTTGGAAGCGAAAAGGAAACACATACAAGAATACCCAAGACGCTGGCCGTATCTTTCTACTGCATGCGGGTCGAGATTCACAGCGCGCAATCAAAGAAAACATATCATTACGTAGACGTCCATGGAAAGAAGACCGTTTACAATTTCCCAGAATGTGATGAAAGTTCTACTGATGTTAAGCAGAAACaaatcgGACCGGGACTCACCATAGCAAGAAATGCCAAAATAATAGTGAGATATTCGACGGCATATCCGTTCAGACTTCCGGATCAAGCTATGCATTGTGTCTACTGTGAGTCGAGTTACACAGACCCAGTAAAATTTAGGGAGCACGTGAAAAAGGATCATGAATTATTCAGGGTGGATGAGGCATTTTACCATTTAGGGTCGAACTATTACTTGAAAGTCGATTGTACTGAGCTCAGTTGTCGCCTATGTTCAGAAACAATTAAGGATTTAAATGACATGGCAGTCCATTTGAAGACTCATTtacaatgtcaaaatttaaatttagctTACGATATAGGTTTGCAACCTTACATTCTAAATAATAACTCTCGGTTGACATGCGCTTTATGCGAGGTGAAGGTAGAGACTATAAGGGCATTGTCGAGACACATGCAAACACATTACGTTAGATGTACTTGTCCTACTTGTGGAAAAGCGTACGCATCTACGACTTCGTTGCATGCTCATACGATTACGGCTCACGTTGGACCACAGAAGTATCTCTGCAGGAAATGTAAACGATATTTCAGTTCTTTGGAAGCCAAACGGAAGCATGTAGAGAATACTCCTCAGTGTTGGCCATATCTCTGCGTAAATTGCAACATAAGATTTAGTACACTGACTTTAAGAAAGCGTCATTTCGCTGATGTTCATGGCAAGATGCCAGTTTACGAGTGTCCTGAATGTCCTGAAAGTTTTAAAAATGCAAAAGGAAGGCGCAATCACTGTGTGAAGATTCACAAAGATAAAACGGACTTTTGTTCGCATTGTGATGAAAATTTTCTAGATAAAGCCAGTTTTGATGAACACATGGCTGATCATATGTCAAATGTTTTCAATTGCACTGTATGTTCGAAACCTTTCTTTTCAAAGAAGTATTTAAAACAGCACATGTGGATGCAcaATAATGAACCGATGTTCATCGCAAGAAGAAATGGCAGGTTAATAGTCCAGTTCGCGACTGTTTATCCGTTTAGGCTTCCTGAATGTGCTATGGGTTGCGTTTTTTGCGAGTTTAGTTTCGAAGACCCAGCTCAATTTCGCGAACATGTAAACAGTGCTCACAAAAATTTCAAGGCTAAAGACGCTTTCTGGCATTTGAGAAAATGCTATTATTTGAAGGTCGATTGTACGGAACTTACTTGTCGCATATGCCGTCTATCATTCGATAAGTTACATGAACTCGCAACCCATTTAAAGTTGCATTCCGAATGCGCATCACTAGACTTGAATTTCGATTTGGGTCTTCAACCGTTTATTCTCTCTAAAGGGAATTATATTTGTGCTGTGTGTGATACCAAAGGTATGACAATTAGGTCACTTTCAAGGCATATGCAGACTCACTTCGTCAAATACACATGTGAGACTTGCGGGAAGCCTTACGCGTCTTCTGAGGCATTACGCACGCATACACTTACGAGTCACGCtggtgataaaaaatatttgtgcaGGAAGTGTATGACGTACTTCAAGTCTACCGCTGAAAGATATCAGCATGTGAAAGATTCGCCGAACTGTTGGCCTCGTCTTTGCAGAGTTTGTGGCGAAAGATTTATGACTGAGAGTCATAAAAATCAGCACCTGGCGACTGTACATGGCAGCAAACCCGTGCACGCATGTCCAGAATGCCCAAAACTGTTTAGCAATAAAACTCAAAGACGAGAACATTATGTTGTTTACCATACCGAGAAAAAAATATCTTGTCCATATTGTGAGAAGAAGTTTTGGAGACAGAGAGATTTGGCTGATCATATCGGAGTACATACCGCAGAAAAAACTTTCATATGTACCGTGTGCTCAAAATCTTTTCTGAGGAGTAAATACTTGACACAGCATATGTGGGTGCATAGCGAAACTAAGCGATTTGAGTGTGAACTGTGTAAGAAACAGTTCGTGCACAAAATCAGTTGGAAAACGCATATGCAGAACTCTCACTCAGAGCAAAATCTGCAATAA
- Protein Sequence
- MLGQQAREELQYVLGDYHFQWLFTFSRETGTWGVSYTRAHSHYLLDQSLANILIPQINKSQHVYSSCNPRSRVGFTSSKHLFGSEKETHTRIPKTLAVSFYCMRVEIHSAQSKKTYHYVDVHGKKTVYNFPECDESSTDVKQKQIGPGLTIARNAKIIVRYSTAYPFRLPDQAMHCVYCESSYTDPVKFREHVKKDHELFRVDEAFYHLGSNYYLKVDCTELSCRLCSETIKDLNDMAVHLKTHLQCQNLNLAYDIGLQPYILNNNSRLTCALCEVKVETIRALSRHMQTHYVRCTCPTCGKAYASTTSLHAHTITAHVGPQKYLCRKCKRYFSSLEAKRKHVENTPQCWPYLCVNCNIRFSTLTLRKRHFADVHGKMPVYECPECPESFKNAKGRRNHCVKIHKDKTDFCSHCDENFLDKASFDEHMADHMSNVFNCTVCSKPFFSKKYLKQHMWMHNNEPMFIARRNGRLIVQFATVYPFRLPECAMGCVFCEFSFEDPAQFREHVNSAHKNFKAKDAFWHLRKCYYLKVDCTELTCRICRLSFDKLHELATHLKLHSECASLDLNFDLGLQPFILSKGNYICAVCDTKGMTIRSLSRHMQTHFVKYTCETCGKPYASSEALRTHTLTSHAGDKKYLCRKCMTYFKSTAERYQHVKDSPNCWPRLCRVCGERFMTESHKNQHLATVHGSKPVHACPECPKLFSNKTQRREHYVVYHTEKKISCPYCEKKFWRQRDLADHIGVHTAEKTFICTVCSKSFLRSKYLTQHMWVHSETKRFECELCKKQFVHKISWKTHMQNSHSEQNLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -