Basic Information

Insect: Dendrolimus pini
Gene Symbol: Zfa
Assembly: GCA_949752895.1
Location: OX457151.1:2749222-2757421[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00051 0.048 15.1 4.9 2 23 275 296 274 296 0.97

2 10 2.8e-05 0.0026 19.0 0.9 1 23 301 324 301 324 0.97

3 10 1.3e-05 0.0013 20.0 5.7 1 23 330 352 330 352 0.98

4 10 6.7e-05 0.0063 17.8 0.9 1 23 358 381 358 381 0.95

5 10 0.00013 0.013 16.9 6.5 1 23 387 409 387 409 0.98

6 10 2.1e-05 0.002 19.4 0.9 1 23 415 438 415 438 0.96

7 10 0.0059 0.56 11.7 7.4 1 23 444 466 444 466 0.98

8 10 2.3e-06 0.00021 22.5 1.0 1 23 472 495 472 495 0.97

9 10 0.00077 0.072 14.5 6.8 1 23 501 523 501 523 0.98

10 10 0.00063 0.06 14.8 2.7 1 23 529 552 529 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00051	0.048	15.1	4.9	2	23	275	296	274	296	0.97
2	10	2.8e-05	0.0026	19.0	0.9	1	23	301	324	301	324	0.97
3	10	1.3e-05	0.0013	20.0	5.7	1	23	330	352	330	352	0.98
4	10	6.7e-05	0.0063	17.8	0.9	1	23	358	381	358	381	0.95
5	10	0.00013	0.013	16.9	6.5	1	23	387	409	387	409	0.98
6	10	2.1e-05	0.002	19.4	0.9	1	23	415	438	415	438	0.96
7	10	0.0059	0.56	11.7	7.4	1	23	444	466	444	466	0.98
8	10	2.3e-06	0.00021	22.5	1.0	1	23	472	495	472	495	0.97
9	10	0.00077	0.072	14.5	6.8	1	23	501	523	501	523	0.98
10	10	0.00063	0.06	14.8	2.7	1	23	529	552	529	552	0.98

Sequence Information

Coding Sequence: ATGGGCTTGGCAGATACATGCAGGGTATGTTTGACCGGTCAGACGCGTTTGCACGCTATAAGCAACACTTTGTTTCAAGAAATCTGGGAAAAGCTAACAAATGCTAAGTTCAATACTAATGATGGGAAATCCCTCCTTGTGTGCTACATGTGCTGCGCACAGCTGAGGAGGGCACATCAGTTGATGAAGAGGGCTTCAGAGGCTGAGAAAATGCTCACAGCTATTGTCAATAATGGTTCTGAAGAGGACAATCTTGAAAATTATGATGTTGAGTCAGACACGCCTTCGGAGTATAATACACTTCTGAAGCCGAAACTGGAAAGTGAAGTTCAAAGTGTTTTGGAGAGGATTGATACAGGCCCATCTGAAAGGAAACGCACAATAAAAGAAGAACCCCGATACGGGAAGCGAATTAAGTTCGAGGATACAACTGAAGACATAAATCCTTTAACTGATGATGTTTTGGAAGGTTTGCAACCAAATGATTCCAAAATGCCAGACAAAATCTTGTCTAAAAAATTATCTGTAGACTCAAATGTGAAAATTTCTAAGAACAATCAAAATGTAAAATCAGTTATGATTTGCAATCAGGCAAATAGTATTTCACCAAAACTTAATATTACACCAAAACATAAGATTGGAATTAAAAATGTGATTGCACAAGGCAGTGAGGCATTTACTTCTAAAGTCATTTGTAATAATGCTGAAAATGAAATGCAATGTTTTCCAAAGAGTGCAGATGCAGTTGCTTCAAGTACTTCATTAGACAAAAGTAATGAAAGAATGCAATCAAGTATCTGTAAAGGATTAGAAAGTGGGCTTTCGTGCCATACATGTGAATACAAATGTGTTACAGAAAGCGAGTTAAAtagacaccttcgtaaacacagtGAGAAGCCATACAAATGTGATGTATGTGAAGATAGGTTTTCACAAAGTGCTAATTTGGAAACCCATAtgaagtataaacacacaaaggagaagaagttCTCATGTCATATTTGTCAGTACAAGTGTGTCACAAAAAGCAACTTAAATGTACAcattcgtaaacacactggagagaagccatacaaatgtgatttatgtgataataGATTTTCACAAAGAGCTGGTTTAGAAAGACACGTAAAGTTTAACCACACAAAGGAGATGAACTTCTCGTGTCATATCTGTCAGTACAAGTGTGTCACAAAATACGAGTTAAATAGACACCTTCGTAATCACACTGGAGAAAAgccatacaaatgtgatttatgtgataataGATTTTCACAAAGAGCTGGTTTAGAAAGACATATAAAGTTTAACCACACAAAGGAgatgaacttctcatgtcatatgtgtcagtacaaatgtgtcacaaaataCAGGTTAAatgtacaccttcgtaaacacactggagagaagccatacaaatgtgatttgtGTGATGAGGGATTTTCACATAGAGGTAGTTTAGAACGTCATATAAAGCTAAACCACAcgaaggagaagaacttctcatgtcatatgTGTCAGTACAAGTGTGTCACAAAATACGAGTTAAATAGACACCTTCTTAAACACACTGAAGAGAAgccatacaaatgtgatttgtgtgattatAAATCTTCATATAAGTTCACTTTAAAGTCACATATAATGTCAAaacattcataa
Protein Sequence: MGLADTCRVCLTGQTRLHAISNTLFQEIWEKLTNAKFNTNDGKSLLVCYMCCAQLRRAHQLMKRASEAEKMLTAIVNNGSEEDNLENYDVESDTPSEYNTLLKPKLESEVQSVLERIDTGPSERKRTIKEEPRYGKRIKFEDTTEDINPLTDDVLEGLQPNDSKMPDKILSKKLSVDSNVKISKNNQNVKSVMICNQANSISPKLNITPKHKIGIKNVIAQGSEAFTSKVICNNAENEMQCFPKSADAVASSTSLDKSNERMQSSICKGLESGLSCHTCEYKCVTESELNRHLRKHSEKPYKCDVCEDRFSQSANLETHMKYKHTKEKKFSCHICQYKCVTKSNLNVHIRKHTGEKPYKCDLCDNRFSQRAGLERHVKFNHTKEMNFSCHICQYKCVTKYELNRHLRNHTGEKPYKCDLCDNRFSQRAGLERHIKFNHTKEMNFSCHMCQYKCVTKYRLNVHLRKHTGEKPYKCDLCDEGFSHRGSLERHIKLNHTKEKNFSCHMCQYKCVTKYELNRHLLKHTEEKPYKCDLCDYKSSYKFTLKSHIMSKHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -