Dpin031735.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457153.1:6282463-6296899[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.034 3.2 9.3 3.9 1 23 232 254 232 254 0.95 2 16 0.033 3.1 9.4 0.1 2 23 283 305 282 305 0.94 3 16 0.0016 0.15 13.5 0.3 2 23 326 348 325 348 0.94 4 16 0.00063 0.06 14.8 2.5 2 23 354 376 353 376 0.95 5 16 0.001 0.099 14.1 1.1 1 23 381 404 381 404 0.96 6 16 1.3 1.2e+02 4.3 0.1 2 23 407 429 406 429 0.94 7 16 0.00021 0.02 16.3 1.7 2 22 436 456 435 456 0.95 8 16 0.033 3.1 9.3 1.0 1 23 513 536 513 536 0.89 9 16 0.004 0.38 12.2 0.1 3 23 565 586 563 586 0.95 10 16 0.06 5.7 8.5 0.3 2 23 609 632 608 632 0.94 11 16 0.00052 0.049 15.0 0.6 3 20 639 656 637 660 0.90 12 16 0.019 1.8 10.1 0.4 1 23 665 688 665 688 0.97 13 16 0.00034 0.032 15.6 0.2 2 23 694 716 694 716 0.94 14 16 0.0012 0.11 13.9 5.0 1 23 720 743 720 743 0.97 15 16 0.00018 0.017 16.4 0.6 2 23 750 771 749 771 0.96 16 16 0.0076 0.72 11.4 2.3 1 23 777 799 777 799 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTTGACGAGATTGTAGTGAAAGAAAGCCCGGGGTTGTGTCGGTGTTGCCTTTCGGAGGGATGTTATAAAGATCTCGGCTCAGAATATACATGGATGAATGAAGCCGAAGTATATGCTGATATGCTATTAGAATGCTTCGATATTAGCATAACTCAGCACAATGAAGGTCCAAACGGACCGAGTCGCCTCATCTGCGAGGTCTGCATCACAAGACTCCGAGACGCTTGCAATTTCAAGAAGCAGGTCTTGGACTCTGAAAAGAAATTCATTGACATGCTGGGACGTGGTGAATTCAGGCCAAAAGTATTGATATACCAGACTCAAATGAAGACTGAGAACAGTGAGGAACAAGTGCAAGAGGAGGTGGAATATCTTGAAGATGATTTGGATTTTGATGATGATGAAGTCCTCAAACCGTCGGTGGATGAGCATTCATCATCACCTCTCGAGACAGTGACAAGTGAGACTATAAGCCTGAAACGGAAGCTAAAGACCAAAAAGACCAAGATCAGTAGACCGAAGAAGCATGTGGAGGTTGATGAGAAACCGAAATCTTCGAAAGCGGTCTCTAAAGGTATAAAAACGAGGAAGTACCGCGGAACGGAATCATCGTCAGTGCGCCGAAGAAAAAACTTTCAAATACTCTTCAACAATACCACTATAATACCTTTTAAATGGCGCGGGAAATATCTTTGTTTTCATTGCAGCAATGATTTCTCTCAATATACCGAATTGAGGAAACACACTAAAGCACATGGTAGCTGTTCTATAAATGACCATTGTCTTAAAGTGTTAAAAGGAGGACAAAATATGGAAATCAAAATTGATATATCTGACATCACTTGCGAGATTTGTAATGAAACTTTTGGTAACATGATTGAGATTACCAATCACCTTATTATTAAACATGATCTGCAATACGACATGAATGTAGATATGGCCATTGAAGAATATCGTTTATTAGATCTCACGTGTCAAGTTTGTGGAGAGAAATTCTCGTATTTCGGATATCTGGTGTCTCATGTCAACAATAGTCATCCAAAGAACTGTCTCGTATGTGATAAATGTTCGcagaaattcaataaaaaaagggaTTTGTTTTCGCACATGAAAAATTATCACAGAGATGGTGGCTATCAGTGTGAAATGTGTCCCCAGAGCTTTAGTtccttaaatattttaagaaaacacCGAAACAATCGACACTTGACGAGATGTGGTATTTGCCAACTGAAACTACCTTCAGCTGTGTTGAAACAGAAACATATAAGCATAGAACATCCTGACGATGGGTCGTTACAGTGTGACAATTGCGATAAAACATTTCACACAAAACAAGGCCTGAGGATGCATCTACGAAAATGTAAAGGCGATGATTTGTGTTACGCAATCAAAAAAGATGATTATAATATGGACCTTGATCAAAACATAGAGGAACCTAAGCGACCAAGTGTAAAGAGAATTCGTGAGAATATCGTCATCGTTATAAATATGTCCACAGCTGtaccttttaatttttttaagaataaatttaaCTGTTTTTACTGTTCGAAAGATTTTCAAGACTCTGATACAATGAGAGAACACACGGTTTTAGAGCATCCCGTATGTGATGTAGATCAGAAATGTATTAGGAAATGTAGGGAATCTGTTGCCTGTGTCAAAATTGATATTTCAACGTTAGCTTGTAAGATTTGCTTCGAATCCTTATCCGATTTGGATAATTTAATAGATCACCTAATAATGAGACATCAAGCGAATTACGATAAATCTATTACGACTTGTTTACAGCCTTACAGGCTAGTTAAGGATCACATGGTGTGCCCCAATTGCCCTAACGAAGTGTTTCGTTTCTTTGGTACGTTGTTAAAACATATGAACAATAAACATactgataataatatcatttgtgTGTACTGCGGTCAATCGTTTCGGCGGGATCAAAACTTACGCGTTCATATATGGAGACACCATAGAGACGGTCGATTTAAGTGTAATATTTGTGATGCTGAGTGCAATATTCCTTCAAGACTTTATATGCACATGGCAAAAGCTCATGGTGTAAAGGCTGCTAAATGTCCAAAATGTCCCGAGGCATTTTCCACTCAGTATCTACGTCAGAAGCATTTGATTGAAGCACACGATTCCGGCCATAAATGTTCTTATTGCGAGAAGTTGTTCACTCGGAACTCCTTTATGAGAGACCATGTGAGAAGAACACATCTGAAAGAGAAGAATGTCGAGTGTTCAATATGCAATATGAagtttttcaataatattctATTAAGGAGACACATGGTGAAACATAGTGGTGAGAAGAATTACCATTGTGACGTCTGTGGCGAGAGGTTTTTCTGGAGAAAAAGCTTACGAACACATATGGTTAGACATAATAAACATTTGAATCCTATTCAGATATAA
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGSEYTWMNEAEVYADMLLECFDISITQHNEGPNGPSRLICEVCITRLRDACNFKKQVLDSEKKFIDMLGRGEFRPKVLIYQTQMKTENSEEQVQEEVEYLEDDLDFDDDEVLKPSVDEHSSSPLETVTSETISLKRKLKTKKTKISRPKKHVEVDEKPKSSKAVSKGIKTRKYRGTESSSVRRRKNFQILFNNTTIIPFKWRGKYLCFHCSNDFSQYTELRKHTKAHGSCSINDHCLKVLKGGQNMEIKIDISDITCEICNETFGNMIEITNHLIIKHDLQYDMNVDMAIEEYRLLDLTCQVCGEKFSYFGYLVSHVNNSHPKNCLVCDKCSQKFNKKRDLFSHMKNYHRDGGYQCEMCPQSFSSLNILRKHRNNRHLTRCGICQLKLPSAVLKQKHISIEHPDDGSLQCDNCDKTFHTKQGLRMHLRKCKGDDLCYAIKKDDYNMDLDQNIEEPKRPSVKRIRENIVIVINMSTAVPFNFFKNKFNCFYCSKDFQDSDTMREHTVLEHPVCDVDQKCIRKCRESVACVKIDISTLACKICFESLSDLDNLIDHLIMRHQANYDKSITTCLQPYRLVKDHMVCPNCPNEVFRFFGTLLKHMNNKHTDNNIICVYCGQSFRRDQNLRVHIWRHHRDGRFKCNICDAECNIPSRLYMHMAKAHGVKAAKCPKCPEAFSTQYLRQKHLIEAHDSGHKCSYCEKLFTRNSFMRDHVRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNYHCDVCGERFFWRKSLRTHMVRHNKHLNPIQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -