Dpin031732.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457153.1:6272940-6278587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.033 3.1 9.4 3.7 1 23 93 115 93 115 0.95 2 15 0.073 6.9 8.3 0.1 2 23 143 165 142 165 0.91 3 15 0.0076 0.72 11.4 1.0 1 23 185 208 185 208 0.98 4 15 0.00051 0.048 15.1 1.3 1 23 213 236 213 236 0.96 5 15 0.024 2.3 9.8 5.5 1 23 241 264 241 264 0.92 6 15 0.052 4.9 8.7 1.9 2 22 283 303 282 303 0.93 7 15 0.0059 0.55 11.7 0.9 1 23 353 376 353 376 0.96 8 15 0.11 10 7.7 0.1 3 23 405 426 403 426 0.90 9 15 0.07 6.6 8.3 0.4 2 23 449 472 448 472 0.93 10 15 0.0002 0.019 16.3 0.1 2 23 478 500 477 500 0.89 11 15 0.0015 0.14 13.6 4.2 2 23 505 527 504 527 0.93 12 15 1.2e-06 0.00012 23.3 0.4 1 23 532 555 532 555 0.96 13 15 2.2e-06 0.00021 22.5 4.2 1 23 559 582 559 582 0.98 14 15 0.00039 0.037 15.4 1.2 2 23 589 610 588 610 0.95 15 15 8.2e-07 7.7e-05 23.8 0.7 1 23 616 638 616 638 0.98
Sequence Information
- Coding Sequence
- ATGTTCAGAAGTCTTCAAATCACAATATCAGCGACAGAAGCACATGATAAAGATTCACGATATCGGGCACAGATGCAATTACTGCGGCAAGATGTTCACGAGAAACTCGTTCATGAAGGATCATATAAGACGGACGCATTTGAAAGAGAAAAACGTGCCGTGTTCGATGAAGAAAGTACGAGCCCACTTGGTGGATATACCTCTGAGCTGCGGAGAGAGAATTTGAAATTACTGTTCAACAACACTACAGTGATGCCATTTAAATGGCGTGGGAAGTACCTTTGTTTCTTCTGCGGCAAAAGCTGTGACGAATATGCAGACTTCAAAAACCATACGAAGTCTCACGGCCATTGCACCACAAAAGATTCTTCCCTTAGAAACATTAAAGATTACAACATTGATATACAGATAGACGTATCGGAAATTGTTTGTAAAATTTGCACTGAACCTTTTAACCATTTCGAAGAGATTATCGATCACTTAATATggaaacacaaaattaattatgaCAGGAGCATAGATATGTCGTATGAAGCGTATCGTTTAGTCGATTTTAAGTGCCTATACTGTGAAGAGCAGTTCGATGAATTCAATTATTTGGTGAACCATTTGAATACTAATCATCCGCAGAACAGATTTATATGTAACGATTGTGGTCTTTGTCTTAACAAGAAGCGAGATCTGGCTTCGCATTTAAAAATTTACCATCGAGAAGGAGGCTATTCTTGTGATCATTGTGTTCAGAAGTTCGACAATTACTATAAATTGAaaagacataaatataatacacattCCAAGCACAGTAACTATCTactaaaaaagaaaacatattCGCGTGGTGAGTTGACTTGTAAGATTTGCTCCAAAGAGTGCAAGTCTCTACAAGGCTTAAGTCAGCACAAAAACACGTGTACAGCGGACAAGACAcccataaagaaaaaaaatccatcggACTTACCGAAGCGAAACAAAAACCCGCAGTTGCTAAGAATCAGGCAAAATATACAATGTATTATAAACATGTCCACAGCTACgcctttcaaatttttttggaaTTACACTTGCTTCTATTGTTCCACAAAGTTTATAGAGTTCGATGATTTGAGAGAGCATACGGCCTCAGAGCACCCTGTGTTTGAAACAAAGgctaaatatataagaaaatataatctgaaaaggGCATGTGTTAAGATTGATATAGCTCACCTCGATTGTAAACTTTGTTACCTTTCCTTCCCAGATCTAGATGATTTCATAGACCACGCAGTTAAAGACCACAAAGCTGATTATGACAAGTCTGTAACGAACTGTTTACAGCCATTTAGAATAGTTAAAGATAATATACCATGCCCATTTTGTCCTGACAAAATATTTCGCTACTTCAACACCCTGCAAAGACATTTCAATTCGGAGCATAGCGACTATCACATTATGTGCGATTTCTGCGGAAAGAAATTTGAGAGCGCAGCGAATTTGCAAATTCATTCCTCATACGCACATACGGGTTGGTGCAAATGTGACGTATGTGGTGGGAAGTTTAAGAACCAATCGTGTCTAGCGCGTCATAAAGCGAGCAGCCATAACGTTAAAGACTACAAGTGCGAGATTTGCTCAGAGGTTTTCATATCTCGATATCAACTACAAAAGCATATGATACAGGTGCACGATATTGGACACAAATGTAATGAGTGTGGGAAGATGTTCACACGGAACTCCTTCATGAAGGACCATATACGACGGACACATTTGAAAGAGAAGGACATTGTCTGTTCGGCGTGTGATGAGAGATTTTTCGATAAATATCACCTGAAACTGCATATGGTGAGACATAACGGGGAGAGAAAATTCACTTGCGAGATCTGTGGGAAATCGTTTCTGAGGAAGAGAAATTTGACCGTTCATATGgaaatgcataaaaaaaacggacaagtttAA
- Protein Sequence
- MFRSLQITISATEAHDKDSRYRAQMQLLRQDVHEKLVHEGSYKTDAFEREKRAVFDEESTSPLGGYTSELRRENLKLLFNNTTVMPFKWRGKYLCFFCGKSCDEYADFKNHTKSHGHCTTKDSSLRNIKDYNIDIQIDVSEIVCKICTEPFNHFEEIIDHLIWKHKINYDRSIDMSYEAYRLVDFKCLYCEEQFDEFNYLVNHLNTNHPQNRFICNDCGLCLNKKRDLASHLKIYHREGGYSCDHCVQKFDNYYKLKRHKYNTHSKHSNYLLKKKTYSRGELTCKICSKECKSLQGLSQHKNTCTADKTPIKKKNPSDLPKRNKNPQLLRIRQNIQCIINMSTATPFKFFWNYTCFYCSTKFIEFDDLREHTASEHPVFETKAKYIRKYNLKRACVKIDIAHLDCKLCYLSFPDLDDFIDHAVKDHKADYDKSVTNCLQPFRIVKDNIPCPFCPDKIFRYFNTLQRHFNSEHSDYHIMCDFCGKKFESAANLQIHSSYAHTGWCKCDVCGGKFKNQSCLARHKASSHNVKDYKCEICSEVFISRYQLQKHMIQVHDIGHKCNECGKMFTRNSFMKDHIRRTHLKEKDIVCSACDERFFDKYHLKLHMVRHNGERKFTCEICGKSFLRKRNLTVHMEMHKKNGQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -