Dpin031223.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457153.1:185215-194583[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.7e-05 0.0026 19.1 1.1 2 22 156 176 155 176 0.94 2 19 1.4 1.3e+02 4.3 0.1 3 23 182 202 180 202 0.87 3 19 2.5 2.4e+02 3.4 1.4 2 19 208 225 207 230 0.88 4 19 0.00011 0.01 17.2 0.6 2 23 236 257 235 257 0.96 5 19 0.093 8.7 7.9 3.2 1 21 260 280 260 281 0.95 6 19 0.0016 0.15 13.5 2.8 1 23 293 316 293 316 0.96 7 19 3e-05 0.0028 18.9 1.5 1 23 322 344 322 344 0.98 8 19 0.36 34 6.1 0.5 5 23 354 372 353 372 0.96 9 19 1.3 1.2e+02 4.3 1.6 1 23 378 401 378 401 0.94 10 19 0.0007 0.066 14.6 0.1 1 21 409 429 409 430 0.92 11 19 0.0017 0.16 13.4 0.4 2 20 534 552 533 554 0.92 12 19 0.0039 0.37 12.3 0.8 3 23 589 610 588 610 0.97 13 19 0.0027 0.25 12.8 2.3 2 23 616 637 615 637 0.90 14 19 0.43 40 5.9 1.1 2 20 641 659 641 661 0.91 15 19 1.3e-05 0.0012 20.1 0.9 1 23 687 710 687 710 0.95 16 19 0.00088 0.083 14.3 0.9 1 23 716 738 716 738 0.96 17 19 0.22 21 6.7 0.1 1 23 744 766 744 766 0.97 18 19 0.00066 0.063 14.7 0.2 1 23 772 795 772 795 0.94 19 19 0.0016 0.15 13.5 1.1 2 23 802 824 801 824 0.95
Sequence Information
- Coding Sequence
- ATGGTGTTGCCAAACTCAATATGCCGTGATTGTATGAGTAATATAAACGGTTTCATACCTTTCATACAACTATGTAAGGAATCTGTAAACCAATGGAATAGGATAGCAGACTTTTTTACTCAAATACAATTAAGTAGCAAAGTCACCGAGGACGGCACATTGCCCGATTGCCTCTGCCGCGACTGCTACCAAGACACCGTCAATGCCGTGCGCTTCAAACAGCTCTGCGCCGTCTCCCAAGACAAGTGGCACGAGGCCACGGACCACTTGGCCCAAGTCCAAAACCTCGCTGCAGACGACAAGACATACTTCATCCTCTATGACACTAAGACAATCTTAAAAGATCAGAAAAGCAGAACTGGCGACATAACCCGCGCCTTAAATAAGTTGAACGCTTTAATCCAACACCCGCAAATCAGACCGGTACGCAAACACTCCAGGATAAGAGCAGCTGCAGTACCTTGCAAGTGTTTGGATTGCGGAAAGAAATTCACGTCCCCAGTATACTTGAATATTCATTTAAAGACTTCATTGAAATTAGCTTGCACTGTTTGCGGAGGAGTGGTGTCAAAGAGGAGTCTGCGTCAACATCTAGCAGATAGACACGGCGTGTTTGTTGTAGAGTGTTTGCTCTGTAGTGCGACTTTTACTGAAGAAGTTGAATATAAACGCCATTGTAAGGAGAAGCACGGACCAGGGAGGCTTAACTGCTCGTATTGTGGGTGCAGCTTCGCCAACGAGAGGGCTCTTGCCGCCCATATGTTTTCGCACACCCTATTTCATTGCCCGTCCTGCGGAGCCACCTTCGAGAACCGCAAATGCTATATATACCATCAGAAACAGTGTAACGTTTCGGAGGATATTAAGCCGGAGCTGTTCAAATGCGATCATTGCGGCGTCGAGTATGATAAAAAGCCTTCGCTCCGAATCCATATACAGCATAAGCATCTGAACATTCAGCCGTACGTTTGCCAGACTTGTGGCAAGCGCACATCCACGCGAGCTCATCTTGAGTCTCACGAAAAGGTTCATACGAACGAAAGGGTGACTTTTGTGTGCAATTGTGGGTCGACATTCCGCACCGATGTGGGGTATAAGATGCACCTGCGCatacacactggggagaagccttaCAAGTGTTCGACTTGCGGAGATAGATTCCTGTCGGCGTCCAGACGCCGTGATCACATCAAGAGACGGCATAAGACCGAGTCGGATTTGCAGCACGCGTGTGATAAGTGCCCGGCCACCTTCATTCGACCTTGGGAACTAAGAAAGCATTACttaataATCAGAGAAGAAACCTTATGTCCGAATAGCGCGTGTGCAACATGCGCATGCGCCGCACTAGCCGCGCAAGAGTTCAGGCTCTCTGTCAGAAATTCCCACAAGATGTGGTTGAGAACCCTAAACTGCATATCGGAGATTCCCAGCAACAGTTCGTCTTGCAAATCTATTTGCGCGTTCCTCAACGTTGAAGAAATGACAATACAGACGCTGAAGGACTATATCGGAGGTGAGCCCAAAGCGATATTGGACCGGCTGCAGAGATCGAAAAGTAAACGAAAACCTAGATCGGATAGATCCGGGCCACCTTGTGACTGCCCTGATTGCGGCAAAAGATTCCTGACGCCTTACTACCTGAACATGCATCTCATAAACAGCGGTCAGAAAGAAGCCTGTCTCATTTGCGGTGTTGTAGTACTACGCGGCGAAGCAATGCGAGACCACATGGTCTCTGTCCATAAAGAAACAGCCGAACTCTGCACCCAATGTCCTGTCGTGTGCAAAGACCAGAATGAATTACAAACCCACATCACCAAAGCGCATAAAGGCCATTCGTTGACGTGCACCGACTGCGGTAGGACGTTTTCGAGGCGAAAAACCTTCGAGTTCCACAACCAGATGCACGCGGTTAGGACTTGTCGCGCCTGTGGGATCCAATTTACTAACAGAGGTTGTTATAGGGTGCATAGGTCTAACTGCGAACCGGACGCCATGCCAGATACGAAACGGGTTCCTCTCAACCGACGCTCGAACATTCGCGACCCGGCAATATTCCACTGCGCTGACTGCGATAAAACTTACTCGTCCAAACCACAGTTGAAGAACCACATACTCTGGATTCATATGAATATAAGACCTCATCAGTGTCAATGGTGCGAGAAACGGTTCTATACGCCATCAAGACTCGCCGAACATACTGTGGTTCATACTCGAGCCAGGAATTTCGAATGTGATCTCTGTGGTGCAAAATTGGTTTCCAAAATGGCCGCGGTGTACCATAGGAGAagacacactggggagaaaccgTACGAATGTCCGGATTGTGGGGAAAGTTTCATATCTGCTTCGAGGAGGTCTGAGCATGCCAAGAGACGGCACAATAAGGGCATAAAGATCCAGTGCATGTATTGCCCTTCGACCTTTGTTAGGAAGCACGAGATGAAGAGGCATGTGGCGAAGGCTCATGGTCTAGAAGTTTCCATTTGTTCAAATAGGATAGTCTTACAACAGTGA
- Protein Sequence
- MVLPNSICRDCMSNINGFIPFIQLCKESVNQWNRIADFFTQIQLSSKVTEDGTLPDCLCRDCYQDTVNAVRFKQLCAVSQDKWHEATDHLAQVQNLAADDKTYFILYDTKTILKDQKSRTGDITRALNKLNALIQHPQIRPVRKHSRIRAAAVPCKCLDCGKKFTSPVYLNIHLKTSLKLACTVCGGVVSKRSLRQHLADRHGVFVVECLLCSATFTEEVEYKRHCKEKHGPGRLNCSYCGCSFANERALAAHMFSHTLFHCPSCGATFENRKCYIYHQKQCNVSEDIKPELFKCDHCGVEYDKKPSLRIHIQHKHLNIQPYVCQTCGKRTSTRAHLESHEKVHTNERVTFVCNCGSTFRTDVGYKMHLRIHTGEKPYKCSTCGDRFLSASRRRDHIKRRHKTESDLQHACDKCPATFIRPWELRKHYLIIREETLCPNSACATCACAALAAQEFRLSVRNSHKMWLRTLNCISEIPSNSSSCKSICAFLNVEEMTIQTLKDYIGGEPKAILDRLQRSKSKRKPRSDRSGPPCDCPDCGKRFLTPYYLNMHLINSGQKEACLICGVVVLRGEAMRDHMVSVHKETAELCTQCPVVCKDQNELQTHITKAHKGHSLTCTDCGRTFSRRKTFEFHNQMHAVRTCRACGIQFTNRGCYRVHRSNCEPDAMPDTKRVPLNRRSNIRDPAIFHCADCDKTYSSKPQLKNHILWIHMNIRPHQCQWCEKRFYTPSRLAEHTVVHTRARNFECDLCGAKLVSKMAAVYHRRRHTGEKPYECPDCGESFISASRRSEHAKRRHNKGIKIQCMYCPSTFVRKHEMKRHVAKAHGLEVSICSNRIVLQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -