Dpin005415.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457127.1:21550894-21571884[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.085 8 8.1 0.2 2 23 7 28 7 28 0.91 2 13 0.063 6 8.5 0.7 1 21 33 53 33 57 0.92 3 13 0.0069 0.65 11.5 1.0 2 23 171 193 170 193 0.93 4 13 0.0038 0.36 12.3 0.0 1 23 199 221 199 221 0.96 5 13 0.0094 0.89 11.1 0.2 1 23 230 253 230 253 0.92 6 13 3.8e-06 0.00036 21.8 6.2 1 23 258 280 258 280 0.98 7 13 3.5e-05 0.0033 18.7 2.2 1 23 286 308 286 308 0.97 8 13 0.00032 0.03 15.7 5.3 1 23 314 336 314 336 0.98 9 13 8.4e-08 8e-06 27.0 0.4 1 23 342 364 342 364 0.98 10 13 0.016 1.6 10.3 6.8 1 23 370 392 370 392 0.98 11 13 5.5e-05 0.0052 18.1 0.3 1 22 398 419 398 419 0.95 12 13 0.00057 0.054 14.9 0.1 2 23 427 448 426 448 0.97 13 13 4.7e-06 0.00044 21.5 1.9 1 23 454 477 454 477 0.96
Sequence Information
- Coding Sequence
- ATGCGACCGACCCACGAGAAATGCGCCATCTGCGGGAAGGAGTTCTTCAGCGTGGGCCGGTACATGTCGCACGTGGCCCAGCACGGCCCGGTGACGTACCAGTGCGAGGCGTGTTCGCAACTGTTCACGACACTCATCAATTTCAAGGAGCACCAGACCCAAACCGGACACGAGGGCCAGAATGTATTGCCTTCACAGAAGGAGAATgAGCCCAAAGGGAAATCTTCGCCTAATAAAGACAACGAACCAAAAGTAGAAGATCCTCTAGATATTAAATGTAAACGtagtaataatacaataacGCCGGATGAACTACCAATATTAGATCACCAGCCAATAGGTGATGTGAAAGATATAAAGAATGAAGATGATAAATTAAAGTCCGCTAAAGAAGAACCCAGTTCTGATGACAATAAACCCGAGAAGAATGGCGGCGTAATCCAAGTAACTTTGAGTCCTGAAAAATCGGTGGATGCAAATGAAACGAATGAAAAAGCACCGATAAAACTGAAATGTCCACTTTGCGATAAACTATTTAGCAGTAAACAGAGCAGGTCGATGCATCTTAAGGCGACGCACAACGGCGAGCGTCCGTACGCGTGCGCGGAGTGCGGCGCCAAGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCCATCTCGCACCGCAAGCACCGCGGCGCCAAGGGCTACGCCTGCGACCTCTGCGGAAAGGTGCTGAACCACCCGTCGTCGGTGGTGTACCACAAGCAGGCCGAGCACGCGGGCACCCGGTTCGTGTGCAACACCTGCGGGAAGTGCTTCAGGCACAAGCAGCTGCTCCGGAAGCACCAGCTAGTGCACTCGCAGCTGAGGCCGTTCACCTGCAAGACGTGCAATTCGACTTTCAAGACGAAGGCGAATCTGCTCAACCACCAGCTGCTGCACTCTGGTGTGAAGAAGTTCTCGTGTGAATTGTGCAAGCACAAGTTCGCGCACAAGACGAGTCTCACTTTGCACATGCGATGGCACACGGGTCAGAAGCCGTACTCGTGCCAGATATGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTTCGAATGCGAGCACTGCCTGCGCCGGTTCACCACCTCCTCGCAGCACCGGCTGCACCTGCGCCGGCACAGCGCCGACAAGCCCTACGCCTGCCCCAACTGCCCCAAGAGGTTCACGACGCACAGCTCGTGGTCGGCGCACGTGCGCCGCGAGGCGGGCGCGCTGCCGCAGCGCTGCGGCGTGTGCGCGCGCGCCTTCGCCGACAAGTGGACGCTGCAGAAGCACGCGCGGCTGCACACCGGCGAGCGGCCCTTCCGCTGCCCGCACTGCCCGCGCCTCTTCGCCGACAACTCCAACCTCAACAAGCACAAGAAGCAAGTCCACAAGCAAGTCAGCTTACTGGCGTCAGCGAACCAAGCCCACTCGCAAATATCCCAACAGGGTGAAGTGAGCCCCGAGCTTGTCCAGCAGGTTCTTCAGCAAGTCGTCCAAACTCCTAAATCAGTGGTGAAAACCGTGAACAGCAGGATAGTTCCACAAGTGGTAGCGAATCCAATTGCCATTAGTCCAAAGCCGGTGCCGAAGGTGGAGGAGCAGCCCGAGGAACGCGTCATCTACTTCACCTACGACGTGGAGGATGAGGACTCTCCAGCTTACCATATACTGGACCCTGAGGAGGCTACCAATGTGGAAGAGAGCAGGTTGGTGACGACTTGTGCGCTGTACTCCGGGGAGTCCCTGCTGGTGCCGCGACAGGAGCTGGTCCTCCAGAACCAGGAGGAAGAGGAGGAGATCCTGCAGGAAGACCCCGACGACATCCCCCACCATATAGTCGTCGAGACCACACCCCAACATATACCCGTGACAGACGAAGAAGGCAACCCGCTGCAGTTCACGATGCAAGACGGGACCAAGCTTGCTATCACGTCGGTCGATGGCAAATCTTTAcagGTGGTAACTCAGGACGGACAGACGATACCTATTGAAATAAATGGATTTAGTGAAGAGGATAATAGTACAAAATACATAGTTTCTAGTCTTTGTATGTAA
- Protein Sequence
- MRPTHEKCAICGKEFFSVGRYMSHVAQHGPVTYQCEACSQLFTTLINFKEHQTQTGHEGQNVLPSQKENEPKGKSSPNKDNEPKVEDPLDIKCKRSNNTITPDELPILDHQPIGDVKDIKNEDDKLKSAKEEPSSDDNKPEKNGGVIQVTLSPEKSVDANETNEKAPIKLKCPLCDKLFSSKQSRSMHLKATHNGERPYACAECGAKFAYPRSLALHAISHRKHRGAKGYACDLCGKVLNHPSSVVYHKQAEHAGTRFVCNTCGKCFRHKQLLRKHQLVHSQLRPFTCKTCNSTFKTKANLLNHQLLHSGVKKFSCELCKHKFAHKTSLTLHMRWHTGQKPYSCQICGKSFSQKGNLSEHERIHTGEKPFECEHCLRRFTTSSQHRLHLRRHSADKPYACPNCPKRFTTHSSWSAHVRREAGALPQRCGVCARAFADKWTLQKHARLHTGERPFRCPHCPRLFADNSNLNKHKKQVHKQVSLLASANQAHSQISQQGEVSPELVQQVLQQVVQTPKSVVKTVNSRIVPQVVANPIAISPKPVPKVEEQPEERVIYFTYDVEDEDSPAYHILDPEEATNVEESRLVTTCALYSGESLLVPRQELVLQNQEEEEEILQEDPDDIPHHIVVETTPQHIPVTDEEGNPLQFTMQDGTKLAITSVDGKSLQVVTQDGQTIPIEINGFSEEDNSTKYIVSSLCM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -