Dpin031743.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dendrolimus pini
Gene Symbol
-
Assembly
GCA_949752895.1
Location
OX457153.1:6376784-6385159[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.05 4.7 8.8 2.4 1 23 71 94 71 94 0.92
2 29 0.51 48 5.6 0.0 2 23 125 147 124 147 0.92
3 29 6.3 5.9e+02 2.2 2.2 2 23 170 191 169 191 0.96
4 29 7.7e-05 0.0073 17.6 0.2 1 23 195 217 195 217 0.97
5 29 0.41 39 5.9 1.1 1 14 222 235 222 245 0.83
6 29 0.19 18 7.0 5.4 1 23 252 275 252 275 0.95
7 29 1.5e-05 0.0014 19.9 0.5 1 23 282 305 282 305 0.97
8 29 0.00018 0.017 16.5 2.5 1 20 311 330 311 333 0.93
9 29 0.00046 0.044 15.2 2.6 1 23 339 361 339 361 0.99
10 29 0.093 8.8 7.9 0.2 1 17 366 382 366 382 0.90
11 29 0.0056 0.53 11.8 1.1 1 23 441 464 441 464 0.95
12 29 0.0023 0.21 13.0 0.8 2 23 530 551 529 551 0.97
13 29 0.0076 0.72 11.4 0.4 1 23 555 577 555 577 0.97
14 29 5.1e-05 0.0048 18.2 1.0 1 23 582 605 582 605 0.96
15 29 1.9 1.8e+02 3.8 3.9 2 23 612 634 611 634 0.95
16 29 1.9 1.8e+02 3.8 2.9 1 23 641 665 641 665 0.97
17 29 0.0022 0.21 13.1 0.8 1 23 671 693 671 693 0.98
18 29 8.5e-05 0.0081 17.5 0.3 1 23 699 721 699 721 0.96
19 29 8.4e-05 0.0079 17.5 2.5 1 23 727 750 727 750 0.98
20 29 0.021 1.9 10.0 1.7 1 23 815 838 815 838 0.94
21 29 0.31 30 6.3 0.0 2 23 867 889 866 889 0.91
22 29 2.8 2.7e+02 3.3 4.2 2 23 912 933 911 933 0.95
23 29 3.1e-05 0.0029 18.9 0.5 1 23 937 959 937 959 0.98
24 29 1.4 1.3e+02 4.2 0.4 1 23 964 986 964 986 0.85
25 29 0.0098 0.93 11.0 1.8 1 23 990 1013 990 1013 0.96
26 29 0.00031 0.03 15.7 0.4 2 23 1021 1043 1020 1043 0.95
27 29 0.00023 0.022 16.1 3.4 1 23 1049 1071 1049 1071 0.98
28 29 2e-05 0.0019 19.5 0.5 1 23 1077 1099 1077 1099 0.99
29 29 5.6e-05 0.0053 18.1 1.9 1 23 1105 1128 1105 1128 0.98

Sequence Information

Coding Sequence
ATGATCACCAGTAGAAGGATCAAAGTTAAATCACATAAAGAAAGTACGTTTGAAATTAAAGAAATAGTGAATCCAAAAGTAGATCGTACAAAAGACTTGATATCTCTGGCGCCCAAAAAAGAAGACATAGAGAAACATCTAAAGAACATAGAAGCACTATTAGAAAATACGAATGCAACACCGATAAAAAGTCATTTACCCGGTTTGGGATACAACTGCTGCTTCTGTTCCAAGATTTATCCGAAACCTAAGGACCTAAAAACTCACACATTAGACGAGCACGACTATGAAGATAAATGCAAGTTTATAAAACATTCCCGAAAATATTGTGCAGCTCGAGGGTTTCTTGTCAAAGTAGACATTACCTCCTTAACCTGTAACTTATGCAATGAGTCACTTGATAATCCAGAACAAGCATTTGATCATTTATACATCATTCATGATATAACAGTATACACTGatatcaaaaatcaaataataccaTTCAAGTTTGAAGGCGATATTCTCAAATGCGTAGTATGCTTCAGCGAGTTTAATACGTTCAAGATGATTTTTAGTCACATGCATGTACATTACGCTAATTATCCATGTCCAAAATGTGACCGCTCCTTCATTAACTATCTTTTACTGAGAGCACACTATCTTCTACACGAGCGAGGAGAGTTTCCGTGTAATtattgccaaaagatattcgaTACAATATCGAAAAAAAAGTTTCATGAGAAGGCAGTACATCTATCTGGCAATAAGAGGTATAAGTGTCCACATTGCGGTGATATGTTCCCCAGTCATTACAAGAAACATGATCATATGAATCAAGAGCATGGTATTGAGCCACCGTTATATAATTGCAATGCTTGTGACGCGACGTTTACAAGACAAAGAAGCTTAACTGTGCATATAAGGAAAATACATCTATTGGATTTGAAATATGAGTGCGAGTATTGTAACAAGAGGTTCTTTAGGAATTTCGATTTGAGAAATCATTTGCCGAAGCATACAGGAAAGAAAGAATATCAATGCGCCACTTGTTTGAAATGTTATCCTAGGTTAACATACTTGAAAGAGCATATGAAGATTCATAGACTTAAGAAGTATAAATGTGAACTGTGCGATGAGTCATTTGTTCTGGAGCATCATCTGACAGGTGAACAACGGAGACTCAATGAATTCGCGAAAGAAGTGGGAATCGTTATCAAAACATTAGAGAAATCCTCTGATGCTAAGCCAGAAACAGAGTATCAGAAGAGTGTACATAACGCTAAAGTTATTCTTAGATGCACAAACGCAACTATGATAAGGAAACACGACGGCTTGAAGTACCACTGTTGGTTCTGTGTGAAAACATTTGAATTACCCGAAGATTTAAAGCAACATACTCGGGACGAACATTCTAGAAGAAAATTCAGAGCGGTAGCTCACGATAACCTTAAACTTGATATAACAAACTTATTATGTAGAGTTTGTGACGAGCAATTACCTACGCTAGAAGAATGCATTCAACATCTCATCACTGTTCACGGACTAAACATTTACACAGATATAAAAAGCTGCTTAGTCCCTTTCAAATTCGAAGGAAACGAACTGAGATGCGTATATTGTGATAGAGATTTCGGCAAGTTTAGAGTTCTACAAGAGCATATGAGGACTCATTTCAATAATTACGTGTGCGATGTGTGCGGTGGTAGTTTCATCACGAATAGGCAATATCGGTTTCATATGGATAGCCACAAATTTGGAACGTTTCCTTGCGAGACTTGTTCAAAAGTTTTTGACACTCCCAGTAAATTGAAATATCATAAGAGACAAGTCCACGATTTGTATAAGGCGAATAAATGTGGACATTGTGGTGAGAAATTTTTGAATTGCACTACGAAAGAGAAGCACTTGGCCACCGTGCATGGAATCAAGATGGAAGAATACAAATGTAAAGCGTGTGACGACAAAGTATATCAAACGAGATCTTCTTTATGGTGTCATATAAAGAAACAACACTTGATGGAGAAGCATTATTCGTGTGACATTTGCGACCAAAAATTCTTTTGGAAAAAGTCTTTGGAAGATCATATGATTAAGCATACAGGTGTTAAGGATTACGTGTGTATTATCTGCACGAAGGCGTATGCGAGGAAGAAATCTTTGAACGAGCATATGAGAATCCACAAAGATGATCGAAGATTCAAATGCGAGACGTGCGGTCTGGCGTTCGTACAAAAGTGCAGTTTACGAGGTCACATGAAATCGAAACAtggTAAACATGGAGTTATCCTCAAACACGAAAGGGCTCAAGATACTCCAAAGAAAGTTATAGTAAAAGTAGAACTTAATCAAGGAGAAAAAGTAAAGGTCCGAAAAGAGCGCCCTAATCAACACCGTTGGAACATAATAGAGATTATGAAAAACTCCAACGCAACACCGATCAAAAGTCACAGGGGGATTGGTTATACCTGCTGCTACTGCAACATGGAGTTCCCAGAAACACCAGATCTGAAAAAACATACATtagaaaatcataaaaatgatGCATATTACAAAGCATCTTTTCTTAAAAGAATGAATATGAGCAGATATAATGTTAAATTGGATATAACAGATCTCACATGTAACCTTTGTGGTGCAAATATTGAAGATTTAGAAAAGTTAATGAGGCACCTAATTGATATTCACAAGAAGATTATTTATACGGATATAAAAAACCACATACTTCCATTCAAATTTGATACGGGACCACTTAAATGCTTTATGTGTAATAGTGTTTTTCACAAATTTAAAATGCTGCATGAACACATGGGCGTTCATTATAGAAATTATACTTGCGACATCTGCGGTATCAGTTTTGTTAATTTCAACAGTCTGACTAATCACAAGTTGTCACACAAAACTGGTAAATTCCCCTGCAAATATTGCGACACAGTACTTGATACGATTATTAAGAAAAGGAACCATGAGAAAGCTCATTCTGTACAACATAAATGCCTTTATTGTCCAGAAACATTCAAGGATTATAGACAGAAGGAAATACATTTGATCAAAGTTCACAATTTAAAGGTTGCTGAATCGAAATGCCAAGCCTGTGGGAAAGTTTATTCCAATCGGAAGCTTCTGCAAGTTCATGTTAAACAGGTACATTTGATGGAAAGACCGCATAAATGCACAGAATGCGAGATGCGATTCTATTCCGACTATGAGTTAAAGAGACACATGATAAAGCATACGAAATTGAGACAGTTTAAATGTCCTGTGTGTTTAAAATCATACGCAAGAAAGAGGACCTTAGTGGAGCATCTCAGGATCCACAATAATGACAGGAGGTACAAATGTGAGCTTTGTGGGCAGGCTTTTGTGCAGAAATGCAGTTTGAGGGGGCACATTAAGTCGAAGCATCGGGAGCATGTAATATAA
Protein Sequence
MITSRRIKVKSHKESTFEIKEIVNPKVDRTKDLISLAPKKEDIEKHLKNIEALLENTNATPIKSHLPGLGYNCCFCSKIYPKPKDLKTHTLDEHDYEDKCKFIKHSRKYCAARGFLVKVDITSLTCNLCNESLDNPEQAFDHLYIIHDITVYTDIKNQIIPFKFEGDILKCVVCFSEFNTFKMIFSHMHVHYANYPCPKCDRSFINYLLLRAHYLLHERGEFPCNYCQKIFDTISKKKFHEKAVHLSGNKRYKCPHCGDMFPSHYKKHDHMNQEHGIEPPLYNCNACDATFTRQRSLTVHIRKIHLLDLKYECEYCNKRFFRNFDLRNHLPKHTGKKEYQCATCLKCYPRLTYLKEHMKIHRLKKYKCELCDESFVLEHHLTGEQRRLNEFAKEVGIVIKTLEKSSDAKPETEYQKSVHNAKVILRCTNATMIRKHDGLKYHCWFCVKTFELPEDLKQHTRDEHSRRKFRAVAHDNLKLDITNLLCRVCDEQLPTLEECIQHLITVHGLNIYTDIKSCLVPFKFEGNELRCVYCDRDFGKFRVLQEHMRTHFNNYVCDVCGGSFITNRQYRFHMDSHKFGTFPCETCSKVFDTPSKLKYHKRQVHDLYKANKCGHCGEKFLNCTTKEKHLATVHGIKMEEYKCKACDDKVYQTRSSLWCHIKKQHLMEKHYSCDICDQKFFWKKSLEDHMIKHTGVKDYVCIICTKAYARKKSLNEHMRIHKDDRRFKCETCGLAFVQKCSLRGHMKSKHGKHGVILKHERAQDTPKKVIVKVELNQGEKVKVRKERPNQHRWNIIEIMKNSNATPIKSHRGIGYTCCYCNMEFPETPDLKKHTLENHKNDAYYKASFLKRMNMSRYNVKLDITDLTCNLCGANIEDLEKLMRHLIDIHKKIIYTDIKNHILPFKFDTGPLKCFMCNSVFHKFKMLHEHMGVHYRNYTCDICGISFVNFNSLTNHKLSHKTGKFPCKYCDTVLDTIIKKRNHEKAHSVQHKCLYCPETFKDYRQKEIHLIKVHNLKVAESKCQACGKVYSNRKLLQVHVKQVHLMERPHKCTECEMRFYSDYELKRHMIKHTKLRQFKCPVCLKSYARKRTLVEHLRIHNNDRRYKCELCGQAFVQKCSLRGHIKSKHREHVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-