Dpon007194.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- nfxl1_1
- Assembly
- GCA_000355655.1
- Location
- NW:1421443-1435345[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3 1e+04 -7.8 5.6 15 19 167 171 166 171 0.81 2 17 0.2 6.7e+02 -0.3 0.4 4 10 202 208 201 208 0.95 3 17 4.5e-08 0.00016 20.9 17.0 1 19 216 233 216 233 0.99 4 17 8.2e-07 0.0028 16.9 11.2 1 18 269 286 263 287 0.88 5 17 1.1 3.6e+03 -2.7 1.9 6 10 312 316 311 316 0.90 6 17 1.1e-08 3.8e-05 22.8 10.8 1 18 322 339 322 340 0.98 7 17 8.9e-06 0.03 13.6 8.3 1 18 375 392 375 393 0.96 8 17 0.45 1.5e+03 -1.5 0.5 1 4 402 405 402 406 0.89 9 17 8.3e-05 0.29 10.4 17.1 1 18 427 444 427 445 0.94 10 17 2.8e-10 9.7e-07 27.9 11.3 1 19 454 472 454 472 0.98 11 17 1.1 3.7e+03 -2.7 0.8 5 10 500 505 500 505 0.93 12 17 0.00012 0.4 10.0 5.7 9 19 520 530 518 530 0.90 13 17 0.072 2.5e+02 1.1 5.3 4 11 542 549 540 550 0.88 14 17 0.19 6.6e+02 -0.3 1.7 13 19 577 583 576 583 0.84 15 17 0.055 1.9e+02 1.4 6.2 1 11 619 629 609 630 0.91 16 17 0.0045 15 4.9 16.6 3 19 660 676 659 676 0.91 17 17 4.4e-06 0.015 14.5 10.7 1 16 719 733 719 739 0.93
Sequence Information
- Coding Sequence
- ATGAGTTCGGGTAATAGACCGAAAACAAATCCATGGGCCAAAACAAATGCTCCAAAAGGTAAAAATCCTCAACAAAAGGGAAATAATCTCGGGCCACCTTTGGGCACCAGTGGGGAGGTGAAATTCAAGGAAGCACAGGCCATTCTGCACAACTCTGTCCAGAAACATGTAAACGATTACGAGTCTTCATCAGATGAAGATGATTTGGACTCAGTTCAGCTGTTGGGTACTGTACTTAAACAATATAATGACACTGGTGGAACGACGGATCAAACGATTAAAACGCAAAACTTTATTCAGGAATCGTTTCTTTCAGGAGCAAATACttgtttaatttgcatttcaagAGTTAAAAGAGATGATAAGaTTTGGAGCTGCGTAAGTTGTTTTGGTGCTTTTCATTTGGATTGTATTCAACGATGGTCCAAAGACACGGTAATGCAACAGAAACAAAGAATTGAAGATCAAACTGTATCAGAAAAAAGGCTGTGCTGGTGTTGTCCTAAATGCCGATCTGATTATATGCCCGATCAATATCCAACTAAATATGTTTGTTTCTGTGGAAAAACAGAGAACCCCATCTATCAACCATTTTTAGTGCCTCATTCTTGCGGAGAAATTTGCAGGAAGAATTTGCTCCCACTTTGTGGACACAAGTGCTTACTACTATGTCATCCAGGGCCATGTCCACCTTGTCCAGTAACAGTAAATGTAACCTGCTATTGTAGTTCGCAACAGCCTTCAACTAGAAGATGTTGCAGTAAAGGATGGTCTTGTGGTAACCGTTGTGGTAAATTGTTATCCTGTGACAAACATTCATGTGCCGATGCGTGTCATTCCGGCGATTGTAAACCTTGTGCGAAGAAGAGCATCCAGAAATGCATGTGCAGCTCTCAACAGAAGCTGAGAGATTGTGCGTTTCCAATTTGGCAATGTGAAAAGGTTTGTGGCAAACCTTTGGATTGCGGGAATCACAAATGTGACGAAACTTGTCATGCGGGAGTCTGTAATTCTTGTGTCTTAACTAAACCGCGCACTTGTCCCTGTGGAAAGTCCACATATAATTTAGCGTGCACAGAAGACACGCCAACATGTGGTTCCACATGCGATAAACTTTTGGAATGTGGCATGCATACATGCAACTATCGATGTCATAAGGATAAATGTGGTCTAtgTTTAGAAACTATAACAAAGTGGTGTAGATGTGGGCAACATTCCAAGGAAATACAATGCAGCAAGCAGTATTTCTGTGAAACTAAATGCAAGAGAATCAGGGATTGTAATAAACACCCATGCAATCGAAAAtgTTGTGACGGAAACTGCCCGCCTTGTGAAAAACCGTGTGGAAATACTCTTCAATGTGGCAACCATAAGTGTTCTTCGGTATGTCACAGTGGCCTGTGCTATCCATGCCAGAAAACCAAGGAAATTTCCTGCCGATGTGGATCTACGAAAATTACCGTGCCTTGTGGTCGAAAGCAAAAAGTTAAACCACCTAGATGCTCCAAGTTATGTGTGACGCCTCCAGAGTGTCATCACGAAAAACGCGACAATCACAAATGCCACTTTGGTGATTGTCCTCCTTGCAGGCAAATTTGCAACAAGCGAAGACCAAATTGCGTTCATCCATGTTCAGCCACTTGCCATGCCGCtgtaattgttaaaattgagGCTCAACAGGGGAGCATGCCATGGGAGCAAAGTGCGCCGCAGTTACAGAAACAAAATCAACCTTGTCCAGTTTGCAAAGTGCCTGTAAAGACTACGTGTTTAGGAAAACACGAAACCGTCGATTGGCCGTGTCATTTGGCAAAACCTGCCAGCTGTGGACGGCCTTGTGGGCGCTTGTTGAAGTGCACCAACCATTCATGTTCTTTACAATGTCATTTGGtcgaaaattcaaatactGAGGTCGAGgCCGGGATCAATTGCGAAATTTGCGAACTGGCCTGCTCTAAACCACGACCCGAAGGATGCACTCACGTTTGTCCGAAACCGTGCCATCCAGCTCGCTGTCCACCCTGCAAGCAAATGTTGAGAATTAAATGCCACTGTGGTCTTACTCAGCCCTATGTCCAATGCAATAGCTGGCTGAATGTGGAGAAACATGAAGAACTACAGAGTTGTGGAAATCAGTGcccaaaaaattatgCTTGTGGTCATCGCTGCAAAACCAATTGCCACTCAGGAGACTGTCCAAATTCCGATTTGTGTAAGAAAAAGATCAAAGTTTTCTGCAAATGTAAGCGCCTTAAAAAAGAATTTCAATGCGAAACAGTCCGCCAAGGGCTGGCTGTAGTCGAATGCGATGAGATTTGTCTTCAAAAGCAagcagaagaaaaagaaaaacttgagGCTGATGAAGCAATTAAACGGAGGGAAGAAGAAATAAGAAACCAAAGAGAATTGGAGTTGTATCAGAAGAAGTTTTCcgggaaaaagaaaaataaagatCGACGAGTTCATGAAGAGGAAGAAAATGGCAGTTTTCTTAAGAAGTACTGGTTGTTAGTTCCAACCGTTTTCATAGTTATTGCGTCAGTTGTACTTTATCAAGTTCtagactaa
- Protein Sequence
- MSSGNRPKTNPWAKTNAPKGKNPQQKGNNLGPPLGTSGEVKFKEAQAILHNSVQKHVNDYESSSDEDDLDSVQLLGTVLKQYNDTGGTTDQTIKTQNFIQESFLSGANTCLICISRVKRDDKIWSCVSCFGAFHLDCIQRWSKDTVMQQKQRIEDQTVSEKRLCWCCPKCRSDYMPDQYPTKYVCFCGKTENPIYQPFLVPHSCGEICRKNLLPLCGHKCLLLCHPGPCPPCPVTVNVTCYCSSQQPSTRRCCSKGWSCGNRCGKLLSCDKHSCADACHSGDCKPCAKKSIQKCMCSSQQKLRDCAFPIWQCEKVCGKPLDCGNHKCDETCHAGVCNSCVLTKPRTCPCGKSTYNLACTEDTPTCGSTCDKLLECGMHTCNYRCHKDKCGLCLETITKWCRCGQHSKEIQCSKQYFCETKCKRIRDCNKHPCNRKCCDGNCPPCEKPCGNTLQCGNHKCSSVCHSGLCYPCQKTKEISCRCGSTKITVPCGRKQKVKPPRCSKLCVTPPECHHEKRDNHKCHFGDCPPCRQICNKRRPNCVHPCSATCHAAVIVKIEAQQGSMPWEQSAPQLQKQNQPCPVCKVPVKTTCLGKHETVDWPCHLAKPASCGRPCGRLLKCTNHSCSLQCHLVENSNTEVEAGINCEICELACSKPRPEGCTHVCPKPCHPARCPPCKQMLRIKCHCGLTQPYVQCNSWLNVEKHEELQSCGNQCPKNYACGHRCKTNCHSGDCPNSDLCKKKIKVFCKCKRLKKEFQCETVRQGLAVVECDEICLQKQAEEKEKLEADEAIKRREEEIRNQRELELYQKKFSGKKKNKDRRVHEEEENGSFLKKYWLLVPTVFIVIASVVLYQVLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -